PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC23124_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 129aa    MW: 15262.8 Da    PI: 10.7771
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC23124_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.62.1e-151051243
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 +i n+s r++t+ kR+  +lKKA+E+ +LC +++  ii+s++
  RrC23124_p1 10 FIVNNSSRKTTYKKRKRALLKKAHEIFTLCRINAGAIIYSPH 51
                 799*************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.984149IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-21291IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-8323IPR002100Transcription factor, MADS-box
PfamPF003196.9E-131051IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MTRRKVILAF IVNNSSRKTT YKKRKRALLK KAHEIFTLCR INAGAIIYSP HDPTPEVWPS  60
FEGMNQVITT FRNLPEIDRH NNMVNQQEFI GQEFVQQRIT KADKLLLKKK KDNREVNLTE  120
DMYRFLQIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVILAFIVNNSSRKTTYKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6084922e-66AB608492.1 Raphanus sativus DNA, microsatellite locus RsSH024, cultivar: rat-tail radish.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444906.14e-67PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-35AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A078GRA32e-44A0A078GRA3_BRANA; BnaA05g31430D protein
TrEMBLA0A3P5ZG072e-44A0A3P5ZG07_BRACM; Uncharacterized protein
TrEMBLM4FIU32e-44M4FIU3_BRARP; Uncharacterized protein
STRINGBra041022.1-P4e-45(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-35AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]