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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC23106_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 246aa MW: 27472.2 Da PI: 10.7577 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.1 | 5.7e-31 | 170 | 227 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+a+d +++++tYe +Hnh+ RrC23106_p1 170 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAADDSSMLIVTYEADHNHS 227 99************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 4.7E-10 | 140 | 166 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-32 | 157 | 227 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.354 | 163 | 229 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-26 | 166 | 228 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.3E-36 | 168 | 228 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-26 | 170 | 226 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
SKFKRVISLL DRTRTGHARF RRAPVISPIQ EIKPTPFQPP PPIRIGSFSS PFKTIDFSSL 60 SSLTTESEHM KHHHRPSETA PFGTQSLSTT VSSHHHRPSE TAPFGTQSLS TTVSSFSKST 120 KRKCNSENHI PEMRLCFLRS LHCSKKRKTK QRRVIRVPAI SAKMSDVPPD DYSWRKYGQK 180 PIKGSPHPRG YYKCSSVRGC PARKHVERAA DDSSMLIVTY EADHNHSLSA ADLAGASVAD 240 LILESS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 156 | 228 | 2 | 73 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00275 | DAP | Transfer from AT2G23320 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430036 | 0.0 | KF430036.1 Brassica rapa WRKY transcription factor 15 (WRKY15) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288916.1 | 1e-151 | probable WRKY transcription factor 15 | ||||
Swissprot | O22176 | 1e-112 | WRK15_ARATH; Probable WRKY transcription factor 15 | ||||
TrEMBL | M4ETP2 | 1e-151 | M4ETP2_BRARP; Uncharacterized protein | ||||
STRING | Bra032174.1-P | 1e-152 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1715 | 28 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23320.1 | 9e-93 | WRKY DNA-binding protein 15 |
Publications ? help Back to Top | |||
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