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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
RrC2305_p2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
C3H |
| Protein Properties |
Length: 410aa MW: 42169.7 Da PI: 7.1824 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC2305_p2 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 37.2 | 5e-12 | 48 | 72 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++ C +++rtG C yG+rC+F+H++
RrC2305_p2 48 EPDCIYYLRTGVCGYGSRCRFNHPR 72
689********************96 PP
|
| 2 | zf-CCCH | 32 | 2e-10 | 98 | 117 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS
zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27
+f+rtGtCkyG++Ck++H++
RrC2305_p2 98 HFMRTGTCKYGASCKYHHPR 117
8*****************96 PP
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| 3 | zf-CCCH | 40.1 | 6.2e-13 | 258 | 283 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C++f+rtG Ck+G++C+++H+p
RrC2305_p2 258 DQPECQYFMRTGDCKFGASCRYHHPP 283
689*********************97 PP
|
| 4 | zf-CCCH | 32.8 | 1.2e-10 | 305 | 330 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+ + C +fa+ G+Ck+G+ CkF H++
RrC2305_p2 305 GVAQCTHFAQHGICKFGPACKFDHSM 330
6788********************85 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 2.7E-5 | 45 | 72 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.023 | 45 | 73 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.9E-9 | 48 | 72 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.35E-6 | 49 | 73 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 51 | 72 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.16 | 94 | 117 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 11.047 | 97 | 118 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.7E-4 | 98 | 117 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.4E-8 | 98 | 117 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.4E-6 | 256 | 283 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.798 | 256 | 284 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.4E-10 | 258 | 283 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.31E-5 | 259 | 283 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.7E-5 | 262 | 282 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.4E-4 | 303 | 330 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.554 | 303 | 331 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.9E-8 | 305 | 329 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.57E-5 | 306 | 330 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 410 aa
Download sequence Send
to blast |
MERYGRAGEE GPRSDPSIEW TSRGVEGLSG GGAGGGGGGE AYPERSNEPD CIYYLRTGVC 60
GYGSRCRFNH PRDRGAVVGA VRGGGGDGAL PERMGQPHFM RTGTCKYGAS CKYHHPRQGG 120
GGSVAPVSLS YLGYPLRPIQ PSSASATAAA AATDTDYLSN NSISTNTFVS AIRPYGPPPM 180
VLPPGMVTYP NWNPYPASLT AMPSPGTGTQ PSIGSSSVYG GVTQLSPSGT AYTTGTYLSG 240
GPSLTTTSKE QSFPQRPDQP ECQYFMRTGD CKFGASCRYH HPPLDAVQPQ TGVLLSSIGL 300
PLRPGVAQCT HFAQHGICKF GPACKFDHSM ASSLSYSPSA SSLTDMPVAP YPIGSSSLSG 360
ASAPVSSSIE TTTAEAVTAV VSGVNSQELA ETGGDSASVS GSIEAKTSSS
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189233 | 1e-98 | AC189233.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB013O20, complete sequence. |
