PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2300_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 349aa    MW: 38153 Da    PI: 8.0242
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2300_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.000242976152
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
         HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52
                +r ++  rEr  R+++N+ f eL + l  +    ++   Ka++L +A++++k
  RrC2300_p5 29 KRINKAVRERLKREQLNDLFIELADSLELN----QQNSGKASVLCEATRFLK 76
                689999*********************997....344556667777766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.23E-62677No hitNo description
SuperFamilySSF474592.49E-102792IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-72896IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.2872878IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF579388.63E-6283339IPR001305Heat shock protein DnaJ, cysteine-rich domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031072Molecular Functionheat shock protein binding
GO:0046983Molecular Functionprotein dimerization activity
GO:0051082Molecular Functionunfolded protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGSKTPSTST HEANAPPVDE RSKKGKVPKR INKAVRERLK REQLNDLFIE LADSLELNQQ  60
NSGKASVLCE ATRFLKDVFG QIESLRKEHA SLLSESNYVT TEKNELKEET SVLETEISRL  120
QSEIEARVNQ SKPDLNASPA PEYHHHHHHY QQHAELASQF SGLPIFQGAA GFQQSSAAAP  180
PPPGSTVLVL PMQPDLQTQA PLMYNNNSSN KRNRNRDMAN SICFFSSPPP PTFCLLQSPG  240
KSVKPPLFFP IGDNKSEVFK TCKSKSFEIQ ATNGTQTPKV SSIVCQKCEG NGAVACSQCK  300
GGGVNLTDHF NGQFKAGGLC WLCRGKKEVL CGECNGAGFI GGFLSTFDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ekc_P56e-39269349181DnaJ/Hsp40 cysteine-rich domain superfamily protein
6ekc_P66e-39269349181DnaJ/Hsp40 cysteine-rich domain superfamily protein
6ekc_P76e-39269349181DnaJ/Hsp40 cysteine-rich domain superfamily protein
6ekc_P86e-39269349181DnaJ/Hsp40 cysteine-rich domain superfamily protein
6ekc_R16e-39269349181DnaJ/Hsp40 cysteine-rich domain superfamily protein
6ekc_R26e-39269349181DnaJ/Hsp40 cysteine-rich domain superfamily protein
6ekc_R36e-39269349181DnaJ/Hsp40 cysteine-rich domain superfamily protein
6ekc_R46e-39269349181DnaJ/Hsp40 cysteine-rich domain superfamily protein
6ekc_R56e-39269349181DnaJ/Hsp40 cysteine-rich domain superfamily protein
6ekc_R66e-39269349181DnaJ/Hsp40 cysteine-rich domain superfamily protein
6ekc_R76e-39269349181DnaJ/Hsp40 cysteine-rich domain superfamily protein
6ekc_R86e-39269349181DnaJ/Hsp40 cysteine-rich domain superfamily protein
6ekc_T16e-39269349181DnaJ/Hsp40 cysteine-rich domain superfamily protein
6ekc_T26e-39269349181DnaJ/Hsp40 cysteine-rich domain superfamily protein
6ekc_T36e-39269349181DnaJ/Hsp40 cysteine-rich domain superfamily protein
6ekc_T46e-39269349181DnaJ/Hsp40 cysteine-rich domain superfamily protein
6ekc_T56e-39269349181DnaJ/Hsp40 cysteine-rich domain superfamily protein
6ekc_T66e-39269349181DnaJ/Hsp40 cysteine-rich domain superfamily protein
6ekc_T76e-39269349181DnaJ/Hsp40 cysteine-rich domain superfamily protein
6ekc_T86e-39269349181DnaJ/Hsp40 cysteine-rich domain superfamily protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210215KRNRNR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485546.11e-131PREDICTED: transcription factor bHLH47
RefseqXP_018485547.11e-131PREDICTED: transcription factor bHLH47
SwissprotQ9SN747e-97BH047_ARATH; Transcription factor bHLH47
TrEMBLA0A078GAQ61e-120A0A078GAQ6_BRANA; BnaA06g20620D protein
STRINGBra019509.1-P1e-119(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117202331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.32e-88bHLH family protein
Publications ? help Back to Top
  1. Rodríguez-Celma J, et al.
    The transcriptional response of Arabidopsis leaves to Fe deficiency.
    Front Plant Sci, 2013. 4: p. 276
    [PMID:23888164]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Martínez-Trujillo M, et al.
    Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana.
    Plant Mol. Biol., 2014. 86(1-2): p. 35-50
    [PMID:24928490]
  4. Li H,Wang L,Yang ZM
    Co-expression analysis reveals a group of genes potentially involved in regulation of plant response to iron-deficiency.
    Gene, 2015. 554(1): p. 16-24
    [PMID:25300251]
  5. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]
  6. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]