PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC22884_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 351aa    MW: 39524.6 Da    PI: 10.0851
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC22884_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.2e-31285343360
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYe eHnh+k
  RrC22884_p1 285 DDYSWRKYGQKPIKGSPYPRGYYKCSSIrGCPARKHVERCLEDPAMLIVTYEAEHNHPK 343
                  99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.1E-15249281IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.5E-33271343IPR003657WRKY domain
PROSITE profilePS5081130.343278344IPR003657WRKY domain
SuperFamilySSF1182901.27E-26281343IPR003657WRKY domain
SMARTSM007741.6E-36283343IPR003657WRKY domain
PfamPF031064.1E-26285342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEEEIEGTNR AAVESCHRVL NLLSSRPHQQ DHLYDMSLVS ETREAVFRFK RVENLLGSRG  60
SSSRSVGHAR FRRAKKPQTH LSQTTFLDPC LQRTELTSSH TPPVVLRSGF HDLSLGVTDS  120
LTLGLSSSSN AKAPPLLQLN QQAVSPSGYP NLFPEHQHRQ QLHERLQAHQ QQQQRHQAEM  180
MMLRKCNIGI SLSFDNSSCT PTMSSTRSFI SSLSIDGSVN NSSFHLVGAP SSTDQSSQYS  240
KRKCLMRGGD EHGSRCHCSK KRKHRVRRSI RVPAISNKVS DIPPDDYSWR KYGQKPIKGS  300
PYPRGYYKCS SIRGCPARKH VERCLEDPAM LIVTYEAEHN HPKLPSQTVT T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20271346276WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240262KRKCLMRGGDEHGSRCHCSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300391e-132KF430039.1 Brassica rapa WRKY transcription factor 21 (WRKY21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472547.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-160WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLM4E2080.0M4E208_BRARP; Uncharacterized protein
STRINGBra022808.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-140WRKY DNA-binding protein 21