PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC226_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 222aa MW: 25682 Da PI: 6.7258 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 29.5 | 9.5e-10 | 19 | 43 | 27 | 51 |
HHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 27 LSvLCdaevaviifsstgklyeyss 51 L +LCdaev +iifsstgkly+++s RrC226_p3 19 LAILCDAEVGLIIFSSTGKLYDFAS 43 89*********************86 PP | |||||||
2 | K-box | 72 | 1.8e-24 | 66 | 152 | 13 | 99 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ ++e+a L++e++ Lq+++R+++Ge+L+ Ls+ eL++Le+qLe sl+ +R kK+++l+++i+el +k + +++en +L++k++ RrC226_p3 66 PESEVKREAAVLRQELHALQENHRQIMGEQLNGLSVDELNNLENQLEISLRGVRMKKEHMLTREIQELSQKRNLIHQENVELSRKVQ 152 356789*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 13.876 | 1 | 45 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.5E-15 | 1 | 44 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.68E-17 | 2 | 67 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.0E-8 | 17 | 41 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.4E-23 | 67 | 151 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.223 | 67 | 157 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MGRGKIVIQR IDDSTSRQLA ILCDAEVGLI IFSSTGKLYD FASSSMKSVI DRYNKSKMEQ 60 QQLLNPESEV KREAAVLRQE LHALQENHRQ IMGEQLNGLS VDELNNLENQ LEISLRGVRM 120 KKEHMLTREI QELSQKRNLI HQENVELSRK VQRIHQENVE LYKKLQSDGF NIQCVFQAYT 180 ANTNGFIHRE LIVAHDESRT QIRLQLSQPD HSDYETPPRG SD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF336979 | 1e-123 | AF336979.1 Arabidopsis thaliana MADS-box protein AGL21 mRNA, complete cds. | |||
GenBank | BT024846 | 1e-123 | BT024846.1 Arabidopsis thaliana At4g37940 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469683.1 | 1e-138 | PREDICTED: agamous-like MADS-box protein AGL21 | ||||
Swissprot | Q9SZJ6 | 1e-126 | AGL21_ARATH; Agamous-like MADS-box protein AGL21 | ||||
TrEMBL | A0A398AHD7 | 1e-127 | A0A398AHD7_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D5P0 | 1e-127 | M4D5P0_BRARP; Uncharacterized protein | ||||
STRING | Bra011797.1-P | 1e-128 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM530 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-128 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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