PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2233_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 512aa MW: 57194.4 Da PI: 6.9349

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2233_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.2	3.8e-29	232	291	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r++ed ++++ tYeg+H h+ RrC2233_p1 232 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCSEDMSILISTYEGTHSHP 291 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-30	217	293	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-26	225	293	IPR003657	WRKY domain
PROSITE profile	PS50811	27.76	227	293	IPR003657	WRKY domain
SMART	SM00774	2.7E-34	232	292	IPR003657	WRKY domain
Pfam	PF03106	1.1E-25	233	291	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MEKEDFLRSG HGKEERTEEM RKLDSHQEYD HIIRSKLDSI KVEMEEAKEE NRRLKASLSR 60 TKKEFEILQT KYNQLMVQHK DPNKFSPKGH HQHKEEDEAK ERTSEREELV LLSLGRRSKS 120 PVPSGSVTSK EKKMKDSMEE TDDDKKIDEQ RLSMGFEYRD LSNPSEKLEF DHSQEKTSLE 180 VSNSNKIPSE NSFGFKNDGD EHEDEDEEEP LPQNIAKKTR VSVRARCETP TMNDGCQWRK 240 YGQKIAKGNP CPRAYYRCTI APSCPVRKQV QRCSEDMSIL ISTYEGTHSH PLPMSATAMA 300 SATSAAASML LSGASSSSSA ADLHGINFSL SSTPKPLLQT SSGHPTVTLD LTTSSSSQQP 360 FLSMLNKFTA PPPSNVSRAN SYPSTNLNFS NNTNTLMNWG GGGSNRNEQY RAPYGNINTH 420 HQQSPYQHMI QTRAAGLSFD PFGRSSSSSP HPTPNSLDIK TIHQVQSLPA ETIKAITTDP 480 HFQSALATAL SSIIGGNLKM DNVARNEDEK SP

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MEKEDFLRSG HGKEERTEEM RKLDSHQEYD HIIRSKLDSI KVEMEEAKEE NRRLKASLSR  60
TKKEFEILQT KYNQLMVQHK DPNKFSPKGH HQHKEEDEAK ERTSEREELV LLSLGRRSKS  120
PVPSGSVTSK EKKMKDSMEE TDDDKKIDEQ RLSMGFEYRD LSNPSEKLEF DHSQEKTSLE  180
VSNSNKIPSE NSFGFKNDGD EHEDEDEEEP LPQNIAKKTR VSVRARCETP TMNDGCQWRK  240
YGQKIAKGNP CPRAYYRCTI APSCPVRKQV QRCSEDMSIL ISTYEGTHSH PLPMSATAMA  300
SATSAAASML LSGASSSSSA ADLHGINFSL SSTPKPLLQT SSGHPTVTLD LTTSSSSQQP  360
FLSMLNKFTA PPPSNVSRAN SYPSTNLNFS NNTNTLMNWG GGGSNRNEQY RAPYGNINTH  420
HQQSPYQHMI QTRAAGLSFD PFGRSSSSSP HPTPNSLDIK TIHQVQSLPA ETIKAITTDP  480
HFQSALATAL SSIIGGNLKM DNVARNEDEK SP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-19	219	293	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430068	0.0	KF430068.1 Brassica rapa WRKY transcription factor 61 (WRKY61) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018447659.1	0.0	PREDICTED: probable WRKY transcription factor 61
Refseq	XP_018449842.1	0.0	PREDICTED: probable WRKY transcription factor 61
Swissprot	Q8VWV6	0.0	WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBL	A0A3P6G857	0.0	A0A3P6G857_BRAOL; Uncharacterized protein
STRING	Bo8g068160.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12663	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	0.0	WRKY DNA-binding protein 61

Publications ? help Back to Top
Gao R,Liu P,Yong Y,Wong SM Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana. Sci Rep, 2016. 6: p. 24604 [PMID:27086702]