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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC22061_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 329aa MW: 37514.2 Da PI: 6.2403 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.4 | 2.1e-51 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPt+eel+ +yL+kk+++ k++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat+ g+Wkatg+dk ++s RrC22061_p1 11 VPPGFRFHPTEEELLEYYLRKKISNIKIDL-DVIRDVDLNKLEPWDIQEmcKIGTtPQNDWYFFSHKDKKYPTGTRTNRATTVGFWKATGRDKIIYS- 106 69****************************.9***************962433332455**************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g +g++ktLvfykgrap+g+k+dW+mheyrl RrC22061_p1 107 NGDRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139 9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.28E-57 | 8 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.03 | 11 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-27 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MKISVNGQSQ VPPGFRFHPT EEELLEYYLR KKISNIKIDL DVIRDVDLNK LEPWDIQEMC 60 KIGTTPQNDW YFFSHKDKKY PTGTRTNRAT TVGFWKATGR DKIIYSNGDR IGMRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD ENVLASSSNH DDDVSVETCE VIGGDEGWVV CRVFMKKSLC 180 KTVTMSSPPR SVKTSPETIE ELFEVMGQSC KEEIIVDPFL KLPNNTIASC QRLMDDQVHN 240 YQVPSFGTSW ATLDRLVASQ LNGPNSYSIP AVDNIPQSPF HGLNRPGFCN TGLTQHYYTT 300 EMDIWNDTDF GRTTTSSSNP WCHVSNSSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-48 | 8 | 178 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-48 | 8 | 178 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-48 | 8 | 178 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-48 | 8 | 178 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-48 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 8e-48 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 8e-48 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 8e-48 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 8e-48 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 8e-48 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 8e-48 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 8e-48 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
4dul_A | 8e-48 | 8 | 178 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 8e-48 | 8 | 178 | 14 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues such as tracheary elements. {ECO:0000269|PubMed:16214898}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018465538.1 | 0.0 | PREDICTED: NAC domain-containing protein 66-like | ||||
Swissprot | Q9M274 | 0.0 | NAC66_ARATH; NAC domain-containing protein 66 | ||||
TrEMBL | A0A3P6BF00 | 0.0 | A0A3P6BF00_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CGZ5 | 0.0 | M4CGZ5_BRARP; Uncharacterized protein | ||||
STRING | Bra003478.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM778 | 28 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61910.1 | 1e-178 | NAC domain protein 66 |
Publications ? help Back to Top | |||
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