PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2200_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 335aa    MW: 37902.5 Da    PI: 6.4235
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2200_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.21.1e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv++v+++G  +W++ ++  g++R++k+c++rw +yl
       RrC2200_p4 14 KGPWTPEEDEKLVNYVQKHGHSSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding55.71.1e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E++ ++++++ lG++ W+tIa++++ gRt++++k++w+++l
       RrC2200_p4  67 RGKFSPDEEQTILNLHAVLGNK-WSTIANHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-25664IPR009057Homeodomain-like
PROSITE profilePS5129418.953961IPR017930Myb domain
SuperFamilySSF466892.42E-3211108IPR009057Homeodomain-like
SMARTSM007179.1E-161363IPR001005SANT/Myb domain
PfamPF002493.6E-181461IPR001005SANT/Myb domain
CDDcd001678.37E-131661No hitNo description
PROSITE profilePS5129426.94762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-2865117IPR009057Homeodomain-like
SMARTSM007174.3E-1666114IPR001005SANT/Myb domain
PfamPF002493.8E-1667112IPR001005SANT/Myb domain
CDDcd001673.15E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRSPSSDDS GLKKGPWTPE EDEKLVNYVQ KHGHSSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SPDEEQTILN LHAVLGNKWS TIANHLPGRT DNEIKNFWNT HLKKKLIQMG  120
IDPMTHRPRT DIFSSLSQLM SLSSNLRGFV DMQQQFPSGQ DQTILKFQTE MAKLQLFQYL  180
LQPPTMNNNI NNPNDFDILS LLNSIASFKD TTTNNLDLDS YLQDFNSLPS LKALNSNMEP  240
SSVFPQTPED NHFKFFNQRE NLPVSPIWLS DPTNSNQSML PSLAPSSAVS DDLIRNQYGI  300
EHVNSNLTSS SQESGVSAAW PDHLLDDSIF SDIIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00503DAPTransfer from AT5G10280Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756600.0KM975660.1 Brassica napus MYB transcription factor 92.1 (MYB92.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468877.10.0PREDICTED: transcription factor MYB39-like
RefseqXP_018468878.10.0PREDICTED: transcription factor MYB39-like
RefseqXP_018468879.10.0PREDICTED: transcription factor MYB39-like
RefseqXP_018468880.10.0PREDICTED: transcription factor MYB39-like
RefseqXP_018468881.10.0PREDICTED: transcription factor MYB39-like
RefseqXP_018468882.10.0PREDICTED: transcription factor MYB39-like
RefseqXP_018468883.10.0PREDICTED: transcription factor MYB39-like
RefseqXP_018468885.10.0PREDICTED: transcription factor MYB39-like
RefseqXP_018468886.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9SBF30.0MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A3P5ZY980.0A0A3P5ZY98_BRACM; Uncharacterized protein
TrEMBLM4EIH80.0M4EIH8_BRARP; Uncharacterized protein
STRINGBra028593.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.10.0myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]