PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2198_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SRS
Protein Properties Length: 1357aa    MW: 153290 Da    PI: 6.6584
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2198_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702160.98.1e-50120313474154
      DUF702    4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100 
                   ++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstW+p++  ++++++++++ss      ++  +k+ + + s+k s     +++s  +++ +
  RrC2198_p1 1203 EEKVCRDCGNRAKKECLFERCRTCCKSRGYNCATHVKSTWIPSSSSSQHHHHHSSSSS------SDRYKKKLKIDPSDKPSVYVVPTTTSRRQERGF 1293
                  6789***************************************998886544444322......223333344433444555555555555555555 PP

      DUF702  101 etsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 
                  +   lP +++++avf+++rv+++++ ++ e++Yq++v+i+Ghvf+G+L+++G+++
  RrC2198_p1 1294 KEG-LPGKIEAPAVFKRTRVTAISNeEQSEIGYQATVTINGHVFRGFLHYYGVDH 1347
                  443.*******************9857789***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2603.6E-82743IPR008979Galactose-binding domain-like
Gene3DG3DSA:2.60.120.2603.6E-8277248IPR008979Galactose-binding domain-like
SuperFamilySSF497853.52E-5785259IPR008979Galactose-binding domain-like
PfamPF028378.8E-4588259IPR006104Glycosyl hydrolases family 2, sugar binding domain
PRINTSPR001322.9E-31183198IPR006101Glycoside hydrolase, family 2
Gene3DG3DSA:2.60.40.3204.4E-23249308IPR013812Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain
SuperFamilySSF493031.98E-14261390IPR006102Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich
PfamPF007035.4E-15261390IPR006102Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich
Gene3DG3DSA:2.60.40.3204.4E-23341390IPR013812Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain
Gene3DG3DSA:3.20.20.804.8E-99397673IPR013781Glycoside hydrolase, catalytic domain
PfamPF028361.5E-99397677IPR006103Glycoside hydrolase family 2, catalytic domain
SuperFamilySSF514451.65E-90397674IPR017853Glycoside hydrolase superfamily
PRINTSPR001322.9E-31401415IPR006101Glycoside hydrolase, family 2
PRINTSPR001322.9E-31432450IPR006101Glycoside hydrolase, family 2
PROSITE patternPS007190442467IPR023230Glycoside hydrolase, family 2, conserved site
PRINTSPR001322.9E-31507522IPR006101Glycoside hydrolase, family 2
PROSITE patternPS006080507521IPR023232Glycoside hydrolase, family 2, active site
PRINTSPR001322.9E-31580595IPR006101Glycoside hydrolase, family 2
SuperFamilySSF493037.91E-25670780IPR006102Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich
Gene3DG3DSA:2.60.40.3207.6E-23674782IPR013812Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain
PfamPF163531.2E-15685778IPR032312Beta-galactosidase, domain 4
Gene3DG3DSA:2.70.98.109.9E-977951088IPR014718Glycoside hydrolase-type carbohydrate-binding
SuperFamilySSF746507.22E-878011088IPR011013Galactose mutarotase-like domain
SMARTSM010383.9E-1188051086IPR004199Beta galactosidase small chain/ domain 5
PfamPF029292.7E-768091085IPR004199Beta galactosidase small chain/ domain 5
PfamPF051423.8E-4412051346IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.9E-2612061246IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.5E-2612971345IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0009341Cellular Componentbeta-galactosidase complex
GO:0004565Molecular Functionbeta-galactosidase activity
GO:0030246Molecular Functioncarbohydrate binding
Sequence ? help Back to Top
Protein Sequence    Length: 1357 aa     Download sequence    Send to blast
MASLATKMIL PSENGYRAWE DQTLFKWRKR DPHVTLRCHD SVEGSLRYWY QRNNVDLTVS  60
KSAVWNDDAV QASLDSAAFW VDGLPFVKSL SGYWNFFLAP TPANVPEKFY DTAFSDSDWK  120
ALPVPSNWQC HGFDRPIYTN IVYPFLNDPP HVPEDNPTGC YRTYFQIPKE WKDRRILLHF  180
EAVDSAFFAW VNGNPVGYSQ DSRLPAEFEI SDYCYPWDSG KQNVLAVQVF RWSDGSYLED  240
QDHWWLSGLH RDVLLLAKPK VFIADYFFKS KLADDFSYAD IQVEVKIDNM LDSSKDLLLS  300
NFIIEAAVFD TTRWYKSGGF SDELSPKVAN LKLNLSPTPV LGFHGYLLEG KLDSPNLWSA  360
EQPNVYILVV TLKDKSGKLL DSESSIVGIR QVSKAFKQLL VNGHPVMIKG VNRHEHHPRV  420
GKTNIESCMV KDLIMMKEYN INAVRNSHYP QHPRWYELCD LFGMYMIDEA NIETHGFDLS  480
GHLKHPTKEP SWAGAMLDRV VGMVERDKNH ACIISWSLGN EAGYGPNHSA MAGWIREKDP  540
SRLVHYEGGG SRTDSTDIVC PMYMRIWDIV KIALDKNESR PLILCEYSHA MGNSNGNIDK  600
YWEAIDNTFG LQGGFIWDWV DQGLLKMGSD GIKRWAYGGD FGDQPNDLNF CLNGLMWPDR  660
TPHPALHEVK HCYQPIKVSL TDGTIRVSNA YFFNTTKDLE FSWTVHGDGV ELGSGTLSIP  720
VIKPQNSFDM EWKSGPWFSS WNDSNAGELF LTITAKLSNP TRSLEAGHLL SSTQIPLPSK  780
REIIPQVMKE KDSVITCETV GDFIKISQQG SWELMINVQK GAIESWKVQG VLLMNEAILP  840
CFWRAPTDND KGGGDSSYFS RWKAAKLDNV EFIVESCSVK STTDKAVEIE FIYLGSSASK  900
SDVLFKVNVT YIIYGSGDII TNWYVVPNSD LPPLPRVGIE FHLENTLDRV EWYGRGPFEC  960
YPDRRSAAHV GIYKQNVADM HVPYIVPGEC GGRTDVRWVT FTNKEGVGIY ASTYGSSSPM  1020
QMNASYYTTG ELDRATHEED LIKGQSIEVH LDHKHMGIGG DDSWTPCVHD KYLIPPKPYT  1080
FSIRLCPITA AASVLDMYKD QLPYSLDSIA KSFYYIYSCL HALIIISTVA NPPSLLSWPP  1140
PHQPSSTIPD HHSSSSAAVG ISTPDYMLGL RNIILLPPPS QTTHPSVEAD HNNNNKSRNS  1200
NVEEKVCRDC GNRAKKECLF ERCRTCCKSR GYNCATHVKS TWIPSSSSSQ HHHHHSSSSS  1260
SDRYKKKLKI DPSDKPSVYV VPTTTSRRQE RGFKEGLPGK IEAPAVFKRT RVTAISNEEQ  1320
SEIGYQATVT INGHVFRGFL HYYGVDHNKA FPCLSKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cvm_A0.0871086501020Beta-galactosidase
6cvm_B0.0871086501020Beta-galactosidase
6cvm_C0.0871086501020Beta-galactosidase
6cvm_D0.0871086501020Beta-galactosidase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0917800.0AY091780.1 Arabidopsis thaliana At3g54435 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483245.10.0PREDICTED: uncharacterized protein LOC108854229
TrEMBLA0A3P6CJ230.0A0A3P6CJ23_BRAOL; Uncharacterized protein
STRINGBra014816.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM898022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54430.18e-83SHI-related sequence 6