PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC21780_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 228aa MW: 25879.4 Da PI: 4.2475

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC21780_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.9	9.8e-05	131	150	36	55
S-STCHHHHHHHHHHHHHHH CS HLH 36 kKlsKaeiLekAveYIksLq 55 +K a++L +AveYIk Lq RrC21780_p1 131 PKAHTASVLNEAVEYIKFLQ 150 68889**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-5	128	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-6	129	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MTGEFEMAGT WWSSPINTNT SIFSGYSLPR PTESSLDITD FEWQNFDNKT NDHNDDFMNT 60 HNSFFEGLFD PNEQLLSDSW PKTTISTAKS ELLESFPFLD NMFLINSEAH DHINDHKSKE 120 QITQDCMNLT PKAHTASVLN EAVEYIKFLQ EQVTVLVNPD HNTRESVQRQ QCSDKEEEEC 180 NSRRHVDLAS RGLCLMPISA SYPVAAAAAS AAEMNTYDFS NLTFPMNS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT015446	7e-31	BT015446.1 Arabidopsis thaliana At4g05170 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022550631.1	1e-107	transcription factor bHLH114-like
Swissprot	Q9M0X8	1e-81	BH114_ARATH; Transcription factor bHLH114
TrEMBL	A0A078IAP9	1e-125	A0A078IAP9_BRANA; BnaA09g19880D protein
STRING	Bra029562.1-P	1e-117	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14428	17	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05170.1	1e-55	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]