PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2153_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 501aa    MW: 56397.2 Da    PI: 5.2699
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2153_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.16e-26188242155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k+r++W+ eLH++Fv+av+q+G  +kA Pk+il+lm+++ Lt+e+v+SHLQkYRl
  RrC2153_p1 188 KARVVWSYELHQKFVNAVNQIGCDHKAGPKKILDLMNIPWLTRENVASHLQKYRL 242
                 68****************************************************8 PP
2Response_reg791.7e-26121181107
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+  ++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga 
    RrC2153_p1  12 VLVVDDDPTWIKILEKMLKKCSY-EVTTCGLAREALRLLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEL-DLPVIMMSVDGETSRVMKGVQHGAC 106
                   89*********************.***************999999**********************5543.7************************ PP

                   EEEESS--HHHH CS
  Response_reg  96 dflsKpfdpeel 107
                   d+l Kp+ ++el
    RrC2153_p1 107 DYLLKPIRMKEL 118
                   *******99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.13E-359131IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.7E-439133No hitNo description
SMARTSM004483.2E-3110122IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.36511126IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.8E-2412119IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.21E-3013126No hitNo description
Gene3DG3DSA:1.10.10.602.0E-27185247IPR009057Homeodomain-like
SuperFamilySSF466893.23E-16186246IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-22188242IPR006447Myb domain, plants
PfamPF002491.8E-7190241IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MEKGFSPVGL RVLVVDDDPT WIKILEKMLK KCSYEVTTCG LAREALRLLR ERKDGFDIVI  60
SDVNMPDMDG FKLLEHVGLE LDLPVIMMSV DGETSRVMKG VQHGACDYLL KPIRMKELKI  120
IWQHVLRKKL QEVRDIEGCC YDGGADWFTQ AHFLGGGEDV SFGKKRKDFD FEKKLLQDES  180
DSSSSSKKAR VVWSYELHQK FVNAVNQIGC DHKAGPKKIL DLMNIPWLTR ENVASHLQKY  240
RLYLSRLEKG KEIKCYSGGV KNMDSPPKDA EINSGHQSPP GKSSYAFLKG TEADQKQLAS  300
ASLSDPTSDV HMPPKAKKTR IGFDPPISSG VFGSLLPWND VPDPVEPKPP ILYESTFLQQ  360
QQQPLASQSS YVANSAPSLL QEEMKPCEFV MPQDLDLSAP SAVPCVKLQE FSPNATSKNT  420
ELNWELPEAH HSGSLDTDLE LSWLQEEHFF ANTGLQNFQF QDYACNPSLL SELPPHLWYG  480
NDRLPDPDEY TLMVDQGLFI S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17184247163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445766.10.0PREDICTED: two-component response regulator ARR11-like
SwissprotQ9FXD60.0ARR11_ARATH; Two-component response regulator ARR11
TrEMBLA0A078GUQ60.0A0A078GUQ6_BRANA; Two-component response regulator
STRINGBra004076.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.10.0response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]