PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC212_p6

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB

Protein Properties

Length: 269aa MW: 30320.9 Da PI: 6.4

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC212_p6	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.9	1.3e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +lv ++ +G g+W+ + + g+ R++k+c++rw++yl RrC212_p6 14 RGEWTEEEDRKLVAYIDVYGIGDWRFLPPKAGLQRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	56.3	7.3e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g++T++E+e ++ + lG++ W+tIa+ m+ gR+++++k++w++ RrC212_p6 67 KGKFTPQEEETIISFHSILGNR-WATIAQQMP-GRSDNDIKNHWNSC 111 79******************.*****.*********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.839	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	4.58E-29	12	108	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-11	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-12	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-22	15	68	IPR009057	Homeodomain-like
CDD	cd00167	1.71E-9	16	61	No hit	No description
PROSITE profile	PS51294	25.574	62	116	IPR017930	Myb domain
SMART	SM00717	4.3E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	6.3E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	3.80E-10	69	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.1E-25	69	116	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MGRATWFEAD GTKRGEWTEE EDRKLVAYID VYGIGDWRFL PPKAGLQRCG KSCRLRWLNY 60 LRPGVKKGKF TPQEEETIIS FHSILGNRWA TIAQQMPGRS DNDIKNHWNS CLKKRLERNG 120 IDPMTHQPMI NLAVKTQSFN TDCGSSSCST ASPSSSSFSS GSARLLNKIA TGISSRQHGV 180 DRIKNILSDP SITSINGQEE GFEQLKIDHG KMLASDDQTD DFLMWDEEKT RHFMEEIGVM 240 DFQTNGVYNP SSSAQYGVYE SGLLDDHLI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-28	14	117	7	109	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018464684.1	0.0	PREDICTED: transcription factor MYB34-like, partial
TrEMBL	A0A0D3DQ89	1e-174	A0A0D3DQ89_BRAOL; Uncharacterized protein
STRING	Bo8g068030.1	1e-175	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18710.1	5e-90	myb domain protein 47