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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
RrC2122_p4 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
NAC |
| Protein Properties |
Length: 265aa MW: 30897.1 Da PI: 7.3012 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC2122_p4 | genome | MSU | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 175 | 2.2e-54 | 10 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99
lppGfrFhPtdeel+v+yL++++ +k++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfFs+r++ky++g r+nra+ sgyWkatg+dk+++s ++++
RrC2122_p4 10 LPPGFRFHPTDEELIVYYLRNQTMSKPCPV-SIIPEVDIYKFDPWQLPEKTEFGENEWYFFSPRERKYPNGVRPNRAAVSGYWKATGTDKAIHS-GSRN 106
79****************************.89***************99999*****************************************.99** PP
NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
vg+kk Lvfykgr pkg ktdW+mheyrl
RrC2122_p4 107 VGVKKALVFYKGRPPKGIKTDWIMHEYRL 135
***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 265 aa
Download sequence Send
to blast |
MEINSNSTTL PPGFRFHPTD EELIVYYLRN QTMSKPCPVS IIPEVDIYKF DPWQLPEKTE 60
FGENEWYFFS PRERKYPNGV RPNRAAVSGY WKATGTDKAI HSGSRNVGVK KALVFYKGRP 120
PKGIKTDWIM HEYRLQDSRK ASTKRNGSMR LDEWVLCRIY KKRGAGKLLD EKEGFMDEVQ 180
IDETLAERRN EEEIMMMTST KLPRTCSLAH LLEMDYMGPI SHILTPFDLH HPDLNGMNES 240
GWFGDLQVNQ DEISNHHRQA SMFQF
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-70 | 9 | 167 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-70 | 9 | 167 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-70 | 9 | 167 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-70 | 9 | 167 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-70 | 9 | 167 | 19 | 173 | NAC domain-containing protein 19 |
| 3swm_B | 2e-70 | 9 | 167 | 19 | 173 | NAC domain-containing protein 19 |
| 3swm_C | 2e-70 | 9 | 167 | 19 | 173 | NAC domain-containing protein 19 |
| 3swm_D | 2e-70 | 9 | 167 | 19 | 173 | NAC domain-containing protein 19 |
| 3swp_A | 2e-70 | 9 | 167 | 19 | 173 | NAC domain-containing protein 19 |
| 3swp_B | 2e-70 | 9 | 167 | 19 | 173 | NAC domain-containing protein 19 |
| 3swp_C | 2e-70 | 9 | 167 | 19 | 173 | NAC domain-containing protein 19 |
| 3swp_D | 2e-70 | 9 | 167 | 19 | 173 | NAC domain-containing protein 19 |
| 4dul_A | 2e-70 | 9 | 167 | 16 | 170 | NAC domain-containing protein 19 |
| 4dul_B | 2e-70 | 9 | 167 | 16 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds to, and transactivates the promoter of the abscisic aldehyde oxidase AAO3. Promotes chlorophyll degradation in leaves by enhancing transcription of AAO3, which leads to increased levels of the senescence-inducing hormone abscisic acid (ABA) (PubMed:25516602). Involved in the control of dehydration in senescing leaves. Binds to the DNA sequence 5'-CACGTAAGT-3' of SAG113 promoter. SAG113 acts as negative regulator of ABA signaling for stomatal closure in leaves, and controls water loss during leaf senescence (PubMed:22184656). Transcription factor of the NAC family involved in senescence. May function in the transition between active cell division and cell expansion (PubMed:16640597). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:25516602}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by the heterodimer APETALA3 (AP3)/PISTILLATA (PI) (PubMed:9489703). Induced by senescence (PubMed:22184656, PubMed:24659488, PubMed:25516602). Induced by abscisic acid (ABA) (PubMed:22184656, PubMed:25516602). Induced by ethylene (PubMed:25516602). {ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:24659488, ECO:0000269|PubMed:25516602, ECO:0000269|PubMed:9489703}. |
| Publications
? help Back to Top |
- Zhang K,Gan SS
An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves.
Plant Physiol., 2012. 158(2): p. 961-9
[PMID:22184656] - Zhang K,Halitschke R,Yin C,Liu CJ,Gan SS
Salicylic acid 3-hydroxylase regulates Arabidopsis leaf longevity by mediating salicylic acid catabolism.
Proc. Natl. Acad. Sci. U.S.A., 2013. 110(36): p. 14807-12
[PMID:23959884] - Shinozaki Y, et al.
Expression of an AtNAP gene homolog in senescing morning glory (Ipomoea nil) petals of two cultivars with a different flower life span.
J. Plant Physiol., 2014. 171(8): p. 633-8
[PMID:24709156] - Xiao D, et al.
SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
Plant Physiol., 2015. 169(2): p. 1275-91
[PMID:26304848] - Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
Plant Cell Rep., 2016. 35(1): p. 155-66
[PMID:26441053] - Seok HY, et al.
Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response.
Planta, 2017. 245(2): p. 329-341
[PMID:27770200]
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