PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2110_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 362aa    MW: 40580.2 Da    PI: 6.1125
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2110_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07125145526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C++f++ G C +Gd C FaHg
  RrC2110_p3 125 ACPDFRK-GGCVRGDACEFAHG 145
                 7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.925120147IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5120146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-6124147IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-5125145IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.568155179IPR000571Zinc finger, CCCH-type
SMARTSM003560.53155178IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MMIGDTRWTY PTVEIPTWPP VSEDFTAGEI FSPVMNSPDS SMLEALAALQ RYLPSNEPDP  60
DSDPDLFGPD SPIDAYSCDH FRMYDFKVRR CARGRSHDWT ECPYAHPGEK ARRRDPRKYS  120
YSGTACPDFR KGGCVRGDAC EFAHGVFECW LHPARYRTQP CKDGGNCRRR VCFFAHSPDQ  180
LRYLPNRSPD RVDSFDVSSP IRHSCARAFQ LSISPVSGSP PVSPRADSGS QSLSRSLGSN  240
SVNDVVSSFR NLQFEKVKSF PPSYNNPLRG YQSGFGSPRG SILGPGFQSL PTTPTRHGNM  300
DIWENGIEEE PAMERVVESG RELRAKMFEK LSKENCMDRV EPDPDQNSGE APDVGWVSEL  360
VM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528160.0AK352816.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-K04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444102.10.0PREDICTED: zinc finger CCCH domain-containing protein 49-like
SwissprotQ9M0G20.0C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A398ARH70.0A0A398ARH7_BRACM; Uncharacterized protein
STRINGBra011087.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.10.0C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]