PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC21076_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 287aa    MW: 33013.5 Da    PI: 6.5251
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC21076_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000124265123
                 EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                 y C+ C+++F  ++ L+ H r  H
  RrC21076_p1 42 YFCGVCDRRFYANEKLVAHFRQiH 65
                 78*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.17E-54167No hitNo description
PROSITE profilePS5015710.974270IPR007087Zinc finger, C2H2
PROSITE patternPS0002804465IPR007087Zinc finger, C2H2
CDDcd061672.55E-10108194No hitNo description
PfamPF019368.9E-6116195IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10102.7E-4117197IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MVAYANRHAF SHVPAHVREE RKDRKLLNQL EKTGLAKPAE PYFCGVCDRR FYANEKLVAH  60
FRQIHETENQ KRVRQIESAK GGQRVRLVAK YAMKMEKYKR AARNLLIPRE GYGLAEELTR  120
GGFRVRMVSD KPEAADRALK EHMVDVMDKR EAECLVLVSD DSGFVDVLWE AKERCLRTVV  180
IGDLSEGKLK RVADVAYSWK EVVMGKAKKE VEKVVGKWRD RDVLRKLEWS YDPVLDKERG  240
LSCCGDWDYG FDSDDEVEVE NGTEMGDGGD WWEMDDEDGV GSSRSCQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472541.10.0PREDICTED: uncharacterized protein LOC108843889
TrEMBLA0A3P6AR790.0A0A3P6AR79_BRAOL; Uncharacterized protein
STRINGBo3g045630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-140C2H2 family protein