PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2081_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 397aa MW: 45592.6 Da PI: 6.3155

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2081_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.4	3e-26	88	181	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt+++v++Li+a++++++++ + +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d+ RrC2081_p2 88 KWTDKMVKLLITAVSYIGDDSCMDGgsrrkfaalQKKGKWKSVSKVMSERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPKLLDS 181 7************8777666432234456667********************************************66999999888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-24	86	209	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MDGKLTQGGG ASSFGGFDMR VHHPDSMNQQ HLQGLPFTMV TGQTCDHHHK GERESDDDEE 60 PSFNEESGGD GHNNNNKSAK GSPWQRVKWT DKMVKLLITA VSYIGDDSCM DGGSRRKFAA 120 LQKKGKWKSV SKVMSERGYH VSPQQCEDKF NDLNKRYKKL NDMLGRGTSC QVVENPKLLD 180 SIGFLNDKEK DDVRKIMSSK QLFYEEMCSY HNGNRLHLPH DLALQRSLQL ALRSRDDHEN 240 HQVEDLDDED HDEHDDDVDR GDCRVVHYGG GGGGPLKKGR QSHSHEDGDH QGHVNSLECS 300 KVTLAHQMPF PQGGDESVRS ASVQKQWIES RTLELEEQKL QIQVELLELE KQRFRWERFS 360 KKRDQELERM RMENERMKLE NDRMGLELKQ RELGVEL

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MDGKLTQGGG ASSFGGFDMR VHHPDSMNQQ HLQGLPFTMV TGQTCDHHHK GERESDDDEE  60
PSFNEESGGD GHNNNNKSAK GSPWQRVKWT DKMVKLLITA VSYIGDDSCM DGGSRRKFAA  120
LQKKGKWKSV SKVMSERGYH VSPQQCEDKF NDLNKRYKKL NDMLGRGTSC QVVENPKLLD  180
SIGFLNDKEK DDVRKIMSSK QLFYEEMCSY HNGNRLHLPH DLALQRSLQL ALRSRDDHEN  240
HQVEDLDDED HDEHDDDVDR GDCRVVHYGG GGGGPLKKGR QSHSHEDGDH QGHVNSLECS  300
KVTLAHQMPF PQGGDESVRS ASVQKQWIES RTLELEEQKL QIQVELLELE KQRFRWERFS  360
KKRDQELERM RMENERMKLE NDRMGLELKQ RELGVEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY045850	1e-152	AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBank	AY091378	1e-152	AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBank	CP002684	1e-152	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F16F4	1e-152	AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018447865.1	0.0	PREDICTED: uncharacterized protein LOC108819350
TrEMBL	A0A3P6CBA0	0.0	A0A3P6CBA0_BRACM; Uncharacterized protein
STRING	Cagra.1632s0015.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	0.0	sequence-specific DNA binding transcription factors