PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 450aa MW: 49923.6 Da PI: 9.1605

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC20665_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	84.7	1.8e-26	287	410	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lp Gf F+Ptde+l+++yL++k+++k+ + +i+e++iy+++P++Lp ++ ++++ w+fF++r k r t sg+W + g k++++k++ RrC20665_p1 287 LPTGFLFRPTDEDLLDYYLRRKLANKTYPN--AISELGIYDHDPSELPsLSILKSTEVWFFFARRILKD---GLVIRETPSGVWLSDGDVKHIKDKSD 379 699**********************887..8***********656667788999999998876...4789999*************** PP NAM 98 elvglkktLvfy.kgrapkgektdWvmheyr 127 + +g+k+++ f k ++ e+t+W+m+ey+ RrC20665_p1 380 RFIGTKQSFKFClKPNNTPLEETNWMMEEYQ 410 *******9444666668*******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54928	1.03E-13	1	49	IPR012677	Nucleotide-binding alpha-beta plait domain
PROSITE profile	PS50102	10.974	1	47	IPR000504	RNA recognition motif domain
Gene3D	G3DSA:3.30.70.330	1.8E-14	1	47	IPR012677	Nucleotide-binding alpha-beta plait domain
Pfam	PF00076	5.4E-8	2	41	IPR000504	RNA recognition motif domain
Gene3D	G3DSA:3.30.70.330	3.2E-17	75	167	IPR012677	Nucleotide-binding alpha-beta plait domain
SuperFamily	SSF54928	3.8E-19	81	180	IPR012677	Nucleotide-binding alpha-beta plait domain
PROSITE profile	PS50102	14.112	90	165	IPR000504	RNA recognition motif domain
CDD	cd12354	1.34E-32	90	165	No hit	No description
SMART	SM00360	5.0E-15	91	161	IPR000504	RNA recognition motif domain
Pfam	PF00076	2.5E-10	92	158	IPR000504	RNA recognition motif domain
SuperFamily	SSF101941	1.57E-31	282	428	IPR003441	NAC domain
PROSITE profile	PS51005	32.776	287	428	IPR003441	NAC domain
Pfam	PF02365	8.5E-18	288	410	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0000166	Molecular Function	nucleotide binding
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEA GGKWLGTRQI RCNWATKGAT SGEDKMSSDS 60 KSVVELTSGV SEDGKDTSNG DAPENNAQYT TVYVGNLGPE VSQVDLHRHF YSLGAGVIEE 120 VRVQRDKGFG FVRYSTHVEA ALAIQLGNTH SYLGGRQMKC SWGSKPTPPG TASNPVPPPG 180 PAPIPGFSAS DLLAYERQLA MSNMTGMSPM MHHPQGQHAL MQAAMGTTGS NQAIYDGGFQ 240 NAKQLMYNVL PRTKNWFLGL KGRALERGRE SLPLSSAPTP SPMAIDLPTG FLFRPTDEDL 300 LDYYLRRKLA NKTYPNAISE LGIYDHDPSE LPSLSILKST EVWFFFARRI LKDGLVIRET 360 PSGVWLSDGD VKHIKDKSDR FIGTKQSFKF CLKPNNTPLE ETNWMMEEYQ RHLQVDNHGF 420 VLCKIFLKKP PVKRTPVKRT PPATVTDTVM

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEA GGKWLGTRQI RCNWATKGAT SGEDKMSSDS  60
KSVVELTSGV SEDGKDTSNG DAPENNAQYT TVYVGNLGPE VSQVDLHRHF YSLGAGVIEE  120
VRVQRDKGFG FVRYSTHVEA ALAIQLGNTH SYLGGRQMKC SWGSKPTPPG TASNPVPPPG  180
PAPIPGFSAS DLLAYERQLA MSNMTGMSPM MHHPQGQHAL MQAAMGTTGS NQAIYDGGFQ  240
NAKQLMYNVL PRTKNWFLGL KGRALERGRE SLPLSSAPTP SPMAIDLPTG FLFRPTDEDL  300
LDYYLRRKLA NKTYPNAISE LGIYDHDPSE LPSLSILKST EVWFFFARRI LKDGLVIRET  360
PSGVWLSDGD VKHIKDKSDR FIGTKQSFKF CLKPNNTPLE ETNWMMEEYQ RHLQVDNHGF  420
VLCKIFLKKP PVKRTPVKRT PPATVTDTVM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2mjn_A	3e-23	3	163	41	185	Nucleolysin TIA-1 isoform p40
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as a component of the pre-mRNA processing machinery. Functions to facilitate the nuclear maturation of plant pre-mRNAs (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY085705	0.0	AY085705.1 Arabidopsis thaliana clone 17210 mRNA, complete sequence.
GenBank	BT026477	0.0	BT026477.1 Arabidopsis thaliana At1g17370 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013599485.1	1e-164	PREDICTED: oligouridylate-binding protein 1B
Refseq	XP_013733234.1	1e-164	oligouridylate-binding protein 1B
Refseq	XP_022563785.1	1e-164	oligouridylate-binding protein 1B-like
Swissprot	Q9LQI9	1e-156	UBP1B_ARATH; Oligouridylate-binding protein 1B
TrEMBL	A0A3N6QP96	1e-164	A0A3N6QP96_BRACR; Uncharacterized protein (Fragment)
STRING	Bo8g104900.1	1e-163	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23884	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	1e-18	NAC domain containing protein 2

Publications ? help Back to Top
Lambermon MH, et al. UBP1, a novel hnRNP-like protein that functions at multiple steps of higher plant nuclear pre-mRNA maturation. EMBO J., 2000. 19(7): p. 1638-49 [PMID:10747031] Lambermon MH, et al. UBA1 and UBA2, two proteins that interact with UBP1, a multifunctional effector of pre-mRNA maturation in plants. Mol. Cell. Biol., 2002. 22(12): p. 4346-57 [PMID:12024044] Arteaga-Vázquez M,Caballero-Pérez J,Vielle-Calzada JP A family of microRNAs present in plants and animals. Plant Cell, 2006. 18(12): p. 3355-69 [PMID:17189346] Peal L,Jambunathan N,Mahalingam R Phylogenetic and expression analysis of RNA-binding proteins with triple RNA recognition motifs in plants. Mol. Cells, 2011. 31(1): p. 55-64 [PMID:21120628] McCue AD,Nuthikattu S,Reeder SH,Slotkin RK Gene expression and stress response mediated by the epigenetic regulation of a transposable element small RNA. PLoS Genet., 2012. 8(2): p. e1002474 [PMID:22346759] McCue AD,Slotkin RK Transposable element small RNAs as regulators of gene expression. Trends Genet., 2012. 28(12): p. 616-23 [PMID:23040327] Nguyen CC, et al. Oligouridylate Binding Protein 1b Plays an Integral Role in Plant Heat Stress Tolerance. Front Plant Sci, 2016. 7: p. 853 [PMID:27379136] Nguyen CC, et al. Overexpression of oligouridylate binding protein 1b results in ABA hypersensitivity. Plant Signal Behav, 2017. 12(2): p. e1282591 [PMID:28112571]