 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC2058_p3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
HSF |
| Protein Properties |
Length: 349aa MW: 37117.6 Da PI: 4.3524 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC2058_p3 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 113.5 | 1.4e-35 | 52 | 144 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98
Fl+k+y++++d+ +++lisw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F++g+k ll++i+
RrC2058_p3 52 FLTKTYQLVDDPVYDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKILLRDIQ 139
9*****************************************************************99.........******************** PP
XXXXX CS
HSF_DNA-bind 99 rkkse 103
r+k +
RrC2058_p3 140 RRKIS 144
**865 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010200 | Biological Process | response to chitin |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MPGEQTGETP TVAGVGGGGG GCSAGNSGGS SGCGPGGGGG GGDSQRSIPT PFLTKTYQLV 60
DDPVYDDLIS WNDDGSTFIV WRPAEFARDL LPKYFKHNNF SSFVRQLNTY GFRKVVPDRW 120
EFSNDCFRRG EKILLRDIQR RKISQPAVPV VAPAVSPSNS GEEQVISSNS SPAAAAAASG 180
GGGGGGGVVL QRTTSCTTAP ELAEENERLR KENVQLSQEL TKLKGLYSNI YTLMSNFTSG 240
QAEGKALDLM PERQEVSEDI VTASGSETGI GLKLDEDLTP RLFGVSIGAK KRARRDELVT 300
AEEEEDDERR EGSNQEGGGG EQGSDVKSQP MEEDNNSDDQ NGPWLELGN
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5d5u_B | 3e-27 | 35 | 141 | 15 | 129 | Heat shock factor protein 1 |
| 5d5v_B | 3e-27 | 35 | 141 | 15 | 129 | Heat shock factor protein 1 |
| 5d5v_D | 3e-27 | 35 | 141 | 15 | 129 | Heat shock factor protein 1 |
| 5hdg_A | 2e-27 | 52 | 141 | 10 | 110 | Heat shock factor protein 1 |
| 5hdn_A | 2e-27 | 52 | 141 | 10 | 110 | Heat shock factor protein 1 |
| 5hdn_B | 2e-27 | 52 | 141 | 10 | 110 | Heat shock factor protein 1 |
| 5hdn_C | 2e-27 | 52 | 141 | 10 | 110 | Heat shock factor protein 1 |
| 5hdn_D | 2e-27 | 52 | 141 | 10 | 110 | Heat shock factor protein 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AL049500 | 3e-31 | AL049500.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T5C23 (ESSA project). |
| GenBank | AL161532 | 3e-31 | AL161532.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 32. |
| GenBank | AY093206 | 3e-31 | AY093206.1 Arabidopsis thaliana heat shock transcription factor-like protein (At4g11660) mRNA, complete cds. |
| GenBank | BT008471 | 3e-31 | BT008471.1 Arabidopsis thaliana At4g11660 gene, complete cds. |
| GenBank | CP002687 | 3e-31 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
