PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2058_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 349aa    MW: 37117.6 Da    PI: 4.3524
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2058_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35521442103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ +++lisw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k ll++i+
    RrC2058_p3  52 FLTKTYQLVDDPVYDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKILLRDIQ 139
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
    RrC2058_p3 140 RRKIS 144
                   **865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-5748141IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-3449141IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-3749141IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.1E-205275IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3152141IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-2090102IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434091115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-20103115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1706.0E-5201229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MPGEQTGETP TVAGVGGGGG GCSAGNSGGS SGCGPGGGGG GGDSQRSIPT PFLTKTYQLV  60
DDPVYDDLIS WNDDGSTFIV WRPAEFARDL LPKYFKHNNF SSFVRQLNTY GFRKVVPDRW  120
EFSNDCFRRG EKILLRDIQR RKISQPAVPV VAPAVSPSNS GEEQVISSNS SPAAAAAASG  180
GGGGGGGVVL QRTTSCTTAP ELAEENERLR KENVQLSQEL TKLKGLYSNI YTLMSNFTSG  240
QAEGKALDLM PERQEVSEDI VTASGSETGI GLKLDEDLTP RLFGVSIGAK KRARRDELVT  300
AEEEEDDERR EGSNQEGGGG EQGSDVKSQP MEEDNNSDDQ NGPWLELGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-273514115129Heat shock factor protein 1
5d5v_B3e-273514115129Heat shock factor protein 1
5d5v_D3e-273514115129Heat shock factor protein 1
5hdg_A2e-275214110110Heat shock factor protein 1
5hdn_A2e-275214110110Heat shock factor protein 1
5hdn_B2e-275214110110Heat shock factor protein 1
5hdn_C2e-275214110110Heat shock factor protein 1
5hdn_D2e-275214110110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0495003e-31AL049500.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T5C23 (ESSA project).
GenBankAL1615323e-31AL161532.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 32.
GenBankAY0932063e-31AY093206.1 Arabidopsis thaliana heat shock transcription factor-like protein (At4g11660) mRNA, complete cds.
GenBankBT0084713e-31BT008471.1 Arabidopsis thaliana At4g11660 gene, complete cds.
GenBankCP0026873e-31CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456504.10.0PREDICTED: heat stress transcription factor B-2b
SwissprotQ9T0D31e-145HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A078J5921e-166A0A078J592_BRANA; BnaC09g52680D protein
TrEMBLA0A3N6Q6T21e-166A0A3N6Q6T2_BRACR; Uncharacterized protein
TrEMBLA0A3P6EEX51e-166A0A3P6EEX5_BRAOL; Uncharacterized protein
STRINGBra040968.1-P1e-164(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-130HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]