PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC20539_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 224aa    MW: 25679.5 Da    PI: 6.2488
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC20539_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.11.6e-10128102129
          NAM 102 lkktLvfykgrapkgektdWvmheyrle 129
                  ++ktLvfy++rap+g kt+W+mhe+rle
  RrC20539_p1   1 MRKTLVFYRNRAPHGIKTTWIMHEFRLE 28 
                  89***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.587146IPR003441NAC domain
SuperFamilySSF1019414.71E-15146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MRKTLVFYRN RAPHGIKTTW IMHEFRLECP NMLPKEDWVL CRVFNKGRDL SLQDHKSDHL  60
TQRFAFNDAP DLNYAPNYNN QLHPLLSSSP STTIDPLHHL DQWGQLMKQP SRTTDHPYHY  120
HCKHQTVACG WEQMMIGSMS SSSAHGHDHE SLLNLLYADN NNDINVTDDQ YNQNYEKILL  180
PSDSTSLDHD KICVGSSSDG GMVSDPHMEC GGLSFETDNP LSFH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464183.11e-164PREDICTED: NAC domain-containing protein 30-like isoform X1
TrEMBLA0A397YBT01e-152A0A397YBT0_BRACM; Uncharacterized protein
STRINGBo8g054390.11e-145(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.14e-76NAC domain containing protein 74