 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC20516_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 154aa MW: 17820 Da PI: 7.9394 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC20516_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.4 | 4.9e-18 | 7 | 62 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
r k+ ++t+eq+++Le++F n+++ + + +L++ lgL++rqV vWFqN+Ra+ k
RrC20516_p1 7 RNKKKRLTQEQVRQLEKCFTLNNKLEPDLKLQLSNTLGLPQRQVAVWFQNKRARSK 62
567889************************************************99 PP
|
| 2 | HD-ZIP_I/II | 104.5 | 8.5e-34 | 8 | 100 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
+kk+rl++eqv++LE++F+ ++kLep+ K +l+++Lgl +rqvavWFqn+RAR kt+ lE +y L+++++a+ +++++Le++v+ L++elk+
RrC20516_p1 8 NKKKRLTQEQVRQLEKCFTLNNKLEPDLKLQLSNTLGLPQRQVAVWFQNKRARSKTQSLELQYCNLQSKLEAVLSDKAKLENQVQFLQDELKR 100
59****************************************************************************************986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009637 | Biological Process | response to blue light |
| GO:0009646 | Biological Process | response to absence of light |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 154 aa
Download sequence Send
to blast |
MENPQSRNKK KRLTQEQVRQ LEKCFTLNNK LEPDLKLQLS NTLGLPQRQV AVWFQNKRAR 60
SKTQSLELQY CNLQSKLEAV LSDKAKLENQ VQFLQDELKR SRNQLALFTH QDSPVDNSNL 120
GSCEEGHDDQ VMVFDELYDC FVTNGRGSSS TSWV
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB007644 | 1e-142 | AB007644.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K19P17. |
| GenBank | AK229211 | 1e-142 | AK229211.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-49-M21. |
| GenBank | BT015927 | 1e-142 | BT015927.1 Arabidopsis thaliana At5g53980 mRNA, complete cds. |
| GenBank | BT021920 | 1e-142 | BT021920.1 Arabidopsis thaliana At5g53980 gene, complete cds. |
| GenBank | CP002688 | 1e-142 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
