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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC20335_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 124aa MW: 14620.6 Da PI: 8.8431 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 56 | 1.4e-17 | 16 | 114 | 4 | 96 |
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknr.atk...sgyWkatgkdke 91 G++F+P d+el++eyL +k+egk+ + i+ d+y+ ePw L++ + + +++ewy+F++r + ++ gk+++r +t+ sg Wka k + RrC20335_p1 16 GIQFQPYDDELINEYLIPKLEGKPRGE---ITMKDVYSKEPWLLDHPMGSffKKNEWYYFVTRTQLSKkkigCGKKAKRkITRdndSGSWKANAK-GD 109 99**********************655...9999**********86444444889*****999776553344566777744446669****9877.56 PP NAM 92 vlskk 96 +++k+ RrC20335_p1 110 IKDKE 114 66643 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-16 | 5 | 119 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 18.822 | 13 | 124 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-10 | 16 | 115 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MYEYNDMYEY NDEDGGIQFQ PYDDELINEY LIPKLEGKPR GEITMKDVYS KEPWLLDHPM 60 GSFFKKNEWY YFVTRTQLSK KKIGCGKKAK RKITRDNDSG SWKANAKGDI KDKETKMVIG 120 NTKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018453519.1 | 6e-83 | PREDICTED: uncharacterized protein LOC108824593 | ||||
Refseq | XP_018479483.1 | 5e-84 | PREDICTED: NAC domain-containing protein 35-like | ||||
TrEMBL | A0A397XK52 | 1e-71 | A0A397XK52_BRACM; Uncharacterized protein | ||||
STRING | Bo9g135840.1 | 2e-71 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2607 | 13 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18300.1 | 7e-13 | NAC domain containing protein 88 |