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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC20334_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
CO-like |
Protein Properties |
Length: 402aa MW: 45578.1 Da PI: 5.4893 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC20334_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 21.8 | 3.9e-07 | 13 | 56 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+ + + +++++C + +lC++C + H+ H++v
RrC20334_p1 13 ARACDSCVKRRARWYCAADYAFLCHSCDGTVHSAnplarrHERV 56
578*****************************657888888876 PP
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2 | CCT | 68.5 | 1.8e-23 | 353 | 396 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
RrC20334_p1 353 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 396
9*****************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 402 aa
Download sequence Send
to blast |
MKSLANVVGG KTARACDSCV KRRARWYCAA DYAFLCHSCD GTVHSANPLA RRHERVRLKS 60 ASPGHSSSSP PHPPTWHQGF TRKARTRRGG KKSHTMVFHD LVPEMSSEDQ SFEVEEQLIF 120 EVPVLNTMGD EQRLNEHMES KIELPLMSMC FKSSEEEDDN AESCLNGLFP TDIELAQFSA 180 DVEILLGGGA DREFHAMDEL GLGEILKIDK EEVEEEEEVA AIKVCDLDDA DETTPFEISF 240 EYEYSQRTTF KEEDEKEDVE KNMIDVGSVN EMSGSIKEEN NEKIHMLRLD YESVISTWGG 300 QGTPWTAHEP PQIDLNMLCC PTDSMVESGG EDHHHKYFRG LGLHMGDAGS GGREARVSRY 360 REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRSSIAA AH
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 363 | 379 | RRTRLFSKKIRYEVRKL |