PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC20195_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 134aa    MW: 14963 Da    PI: 5.6791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC20195_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.33.5e-0529691055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 + R d++ ++ + L++l+ +      +K + a++L +A++YI+ Lq
  RrC20195_p1 29 KERKDKVGERVSALQQLVSPY-----GKTDTASVLLEAMQYIQFLQ 69
                 567788888999999999998.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.1E-91882IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.3381968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00432774IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-122786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.96E-62973No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MMMENKHSVC SLEESSMKRH KSDLSFSSKE RKDKVGERVS ALQQLVSPYG KTDTASVLLE  60
AMQYIQFLQE QVKVLSAPYL QTSPTITQEE LEEHSLRSRG LCLVPVEYTL GIAQSNGADI  120
WAPVKTPTSP AFDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474658.11e-93PREDICTED: transcription factor bHLH113-like
SwissprotQ7XJU27e-81BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A0D3B4G38e-90A0A0D3B4G3_BRAOL; Uncharacterized protein
STRINGBo3g026410.11e-90(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.53e-83bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]