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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
RrC20161_p1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
LBD |
| Protein Properties |
Length: 274aa MW: 29326.7 Da PI: 8.262 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC20161_p1 | genome | MSU | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 127.9 | 4.7e-40 | 52 | 153 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97
+C aCk+lrrkCa++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael+l+
RrC20161_p1 52 PCGACKFLRRKCASGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSLV 149
7***********************9989********************************************************************** PP
DUF260 98 keel 101
+++l
RrC20161_p1 150 QSQL 153
9985 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 274 aa
Download sequence Send
to blast |
MADQQRNHNT SDSRRKSAAG KRTSQRTTTS LFSSGGGAMA ATATTGTGTA SPCGACKFLR 60
RKCASGCIFA PHFGSDQGAA RFAAVHKVFG ASNVSKLLHH IPVNRRHDAV VTISYEAQAR 120
LSDPVYGCVS TILALQQQVA SLQAELSLVQ SQLINSRVAM ANVMQQQQQQ QSHHQQQQLV 180
VMQQTEYSNN SSASTTLAGA TMNSFTATAA AAVSYDVMVP ANLEHSLQPM PRHQQVTINH 240
HEDEEESGTD FSVAVGSTTV AAEIIFPAEG FHRI
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