PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HD-ZIP

Protein Properties

Length: 184aa MW: 21388.2 Da PI: 8.0724

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1_p11	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.8e-18	68	122	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k+ ++t+eql+ Le F+++++++ +++++L+k+lgL+ r + vWFqNr+a++k+ RrC1_p11 68 KKKKMTSEQLKLLEISFQEEMKLDPDRKKKLSKELGLQPRHIAVWFQNRKARWKN 122 67899************************************************95 PP
2	HD-ZIP_I/II	108	6.8e-35	68	158	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk+++++eq+klLE sF+ee kL+p+rK++l++eLglqpr +avWFqnr+AR+k+kqlE+ ye+L++++d + +e++ L++ev +Lr+ ++ RrC1_p11 68 KKKKMTSEQLKLLEISFQEEMKLDPDRKKKLSKELGLQPRHIAVWFQNRKARWKNKQLEHLYESLRQEFDVVCREKKLLQEEVIQLRSMIR 158 9**************************************************************************************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.01E-17	51	125	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.71	63	123	IPR001356	Homeobox domain
Pfam	PF00046	9.5E-16	68	122	IPR001356	Homeobox domain
SMART	SM00389	3.2E-16	68	127	IPR001356	Homeobox domain
CDD	cd00086	7.40E-15	68	124	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-19	70	130	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	98	121	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MECWSSPFIN GDSSSSFIYP FHSFNNVSGA MVETQGGPLH EHYYATPPAM VESSYGEASN 60 TINGYETKKK KMTSEQLKLL EISFQEEMKL DPDRKKKLSK ELGLQPRHIA VWFQNRKARW 120 KNKQLEHLYE SLRQEFDVVC REKKLLQEEV IQLRSMIRDN GSNKTQQTWE TACNEASSAQ 180 FQLK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00049	PBM	Transfer from AT2G36610	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018438771.1	1e-118	PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X2
Swissprot	Q4PSR7	5e-79	ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
TrEMBL	A0A078H8I3	1e-110	A0A078H8I3_BRANA; BnaC04g08710D protein
TrEMBL	A0A0D3BRH6	1e-110	A0A0D3BRH6_BRAOL; Uncharacterized protein
STRING	Bo4g034490.1	1e-111	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36610.1	2e-81	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]