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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
RrC19_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
NAC |
| Protein Properties |
Length: 398aa MW: 46504.3 Da PI: 6.9678 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC19_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 180 | 6.3e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98
+ppGfrFhPtdeelv++yL+kkv++k++e+ ++ik+vd+yk+ePwdL++ k+ +ee+ ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++ ++
RrC19_p1 7 VPPGFRFHPTDEELVDYYLRKKVASKRIEI-DFIKDVDLYKIEPWDLQElcKIGNEEQsEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKSIYL-RHG 105
69****************************.99**************954555554445**************************************.888 PP
NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129
l+g++ktLvfykgrap+g+k+dW+mheyrle
RrC19_p1 106 LIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
9****************************85 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0048759 | Biological Process | xylem vessel member cell differentiation |
| GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 398 aa
Download sequence Send
to blast |
MDSFTRVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DVDLYKIEPW DLQELCKIGN 60
EEQSEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKSI YLRHGLIGMR KTLVFYKGRA 120
PNGQKSDWIM HEYRLETNEN GAPQEEGWVV CRVFKKRLAA TMRRMEDYES SPSNWYDDHL 180
SFMASELHSN PPSRTLHNHH HHQQPFPYGL NASSAYTHNN NPNLQCKKEL ELHYNHMVQH 240
QQQNHHLHES IFHQIPQLET PNSNCNSLPY GSSNNGNNTR NIGKLQQSST LTHQEQFQQG 300
SQSFRSVYYD QDDQVNTDWR VLDKFVASQL SNEEVAAPAS ASTHQNNNKM DARNTDYQMH 360
QGMNLLENDS ERVFDMGEEH ANAHAGFSSS SYQIDLWK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
