PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1988_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 216aa    MW: 23245.3 Da    PI: 10.3267
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1988_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-0792112526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C+f+ + G Ck Gd+C+F H+
  RrC1988_p1  92 VCKFWKA-GNCKKGDQCSFLHS 112
                 5******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.4E-687112IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-687113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-788112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.75192114IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-592112IPR000571Zinc finger, CCCH-type
SMARTSM003205.4E-5118157IPR001680WD40 repeat
SuperFamilySSF509789.16E-11119182IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.0E-11121203IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5008213.984125166IPR001680WD40 repeat
PROSITE profilePS5029412.895125166IPR017986WD40-repeat-containing domain
PfamPF117154.3E-6140173No hitNo description
PROSITE patternPS006780144158IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSYKAPRRYS NGRNFGVERP YENKGPNKWS RNLVWTASDA ANTASKNGST KPQVPGAAAS  60
VSNLQRKDAA YGQRSSSVSG TRGWGSKSKE CVCKFWKAGN CKKGDQCSFL HSWTSLPGMV  120
LVAALEGHKK DLKGIALPQG SDKLFSASSD GTLRIWDCHT GQCVHTINLQ AEAGSLMSEG  180
PWVFLGLPNA VKAFNVQTSK DLHLNGVVGQ VRAMAV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485361.11e-134PREDICTED: zinc finger CCCH domain-containing protein 59-like isoform X1
RefseqXP_018485362.11e-134PREDICTED: zinc finger CCCH domain-containing protein 59-like isoform X2
SwissprotQ9FKR91e-99C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A3P6C1Y01e-129A0A3P6C1Y0_BRACM; Uncharacterized protein (Fragment)
STRINGBo4g140040.11e-130(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.11e-102C3H family protein