PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC19799_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 229aa    MW: 26382.1 Da    PI: 6.3546
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC19799_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.51.2e-102113211128
          NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLv 107
                  de  ++ yL+   ++ +   e ++ ++++++ +P++      ++e+  + F+   +++    r+    +sg W+  g+dk ++++ +g+  g kk+L 
  RrC19799_p1  21 DEKTMSIYLQSMKDSGDSWPEYFFGDTNLFTKNPSEVL----ESENPFFVFVYPITEA--CGRTDG-CDSGGWRIIGRDKLIKDEeSGKILGFKKILK 111
                  77888888888777766444466999999999999985....2344445555544433..345655.47899***********99677889******* PP

          NAM 108 fykgrapkgektdWvmheyrl 128
                  f  +++ +g k +Wvm+++rl
  RrC19799_p1 112 FCGETKARGYKRTWVMEQFRL 132
                  **99***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.20911150IPR003441NAC domain
PfamPF023651.3E-520132IPR003441NAC domain
SuperFamilySSF1019413.66E-2120148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEEIRVAKSA YTKDDHSKAN DEKTMSIYLQ SMKDSGDSWP EYFFGDTNLF TKNPSEVLES  60
ENPFFVFVYP ITEACGRTDG CDSGGWRIIG RDKLIKDEES GKILGFKKIL KFCGETKARG  120
YKRTWVMEQF RLPSKWNPKQ DHVVCKIQLL FQTEISYLLA KHFSYSSDPL PPTQSLPAYG  180
VCLANPQDDG AYHLLTIFDS VGNKWPSYVQ DQYILIYIFH IPFLFSVTF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438492.11e-153PREDICTED: uncharacterized protein LOC108810920
TrEMBLA0A3P6FTR41e-123A0A3P6FTR4_BRAOL; Uncharacterized protein
STRINGBo1g091580.11e-124(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60280.12e-80NAC domain containing protein 23