PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC19739_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 252aa    MW: 29226.5 Da    PI: 9.7346
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC19739_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.81.9e-31140193255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  pr+rWt +LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ+YR+
  RrC19739_p1 140 PRMRWTATLHAHFVRAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT 193
                  9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.23E-15137194IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27138194IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-23140194IPR006447Myb domain, plants
PfamPF002496.6E-7141192IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MELFPSQPDL NLNISRRREE QEQEQVERRL VYQSKASDSV RKDSGHLIHT IKFISNYEPT  60
KIYHNQEHNE SQDQDSRSMM VSQNQTLDHY YYSPTPPFLF SEVNGQHSNP NYSHKFYLRH  120
RRQAQPQPQR FTAKLGVRAP RMRWTATLHA HFVRAVQLLG GHERATPKSV LELMDVQDLT  180
LAHVKSHLQM YRTIKSTEKP TSPGQSDTSD DGAQVKSERQ ARDLQGLWNN SSSEARFHLK  240
ANASGLDISY NK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-16141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-16141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-16141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-16141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-16141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-16141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-16141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-16141195458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:17307928}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534551e-151AK353455.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-31-C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448085.11e-172PREDICTED: probable transcription factor KAN3 isoform X1
RefseqXP_018448088.11e-172PREDICTED: probable transcription factor KAN3 isoform X1
SwissprotQ941I21e-114KAN3_ARATH; Probable transcription factor KAN3
TrEMBLA0A3N6PWS01e-161A0A3N6PWS0_BRACR; Uncharacterized protein
STRINGBo8g049650.11e-161(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139841825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.11e-103G2-like family protein