PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC1938_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HB-other

Protein Properties

Length: 489aa MW: 54568.9 Da PI: 6.6894

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1938_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.9	3.5e-18	21	76	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+ +Le+++++++yps+e+++++A+++gLte+qV+ WF+ rR k+k+ RrC1938_p3 21 KKRKLKTPIQVMALENFYNEHKYPSEEMKAKMAEEIGLTEKQVSGWFCHRRLKDKR 76 8999**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-19	5	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.584	17	77	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-17	19	83	IPR009057	Homeodomain-like
SMART	SM00389	8.1E-19	19	81	IPR001356	Homeobox domain
CDD	cd00086	1.60E-17	21	77	No hit	No description
Pfam	PF00046	1.1E-15	21	76	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MLSDSGEMPA DGDKHSAENS KKRKLKTPIQ VMALENFYNE HKYPSEEMKA KMAEEIGLTE 60 KQVSGWFCHR RLKDKRSVKE DGNNIGGSQD RSSVVLQDRG SVLRQDSCGS TKQTDYWNAK 120 PREVESQRLY DDDGEEDSTS SERRSSLHKS LVSSKDVESS RYVARSEHPQ VMRGYGFSKP 180 SGYLKVKGDN ENVAITAVKR QLGRQYREDG PPLGVVFDPL PPGAFEPQTN VIVQEPIYVG 240 SQRRSHPPYF TGTRKSFVPG PSYELARKSK MHSSEDEDED DDEDEDDMMG GMEPGLGDKQ 300 SLREPSFKSP SLSYSNAAVP DRKGPPQGVP STNNKKSHIS SKGRAEGSRN NMIADFHNLS 360 GTNQTHDYDK STFNGGRQTG YLAKSSNMLP LSSSRSSDSM ERDPSSGMVG KYHGEKMNHR 420 EMHREKLHST GEPLVTKGLK HGYPQQLYTP KPSNSETFER KDQINRSGVE LPSSFNGDET 480 EESSSSSMD

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MLSDSGEMPA DGDKHSAENS KKRKLKTPIQ VMALENFYNE HKYPSEEMKA KMAEEIGLTE  60
KQVSGWFCHR RLKDKRSVKE DGNNIGGSQD RSSVVLQDRG SVLRQDSCGS TKQTDYWNAK  120
PREVESQRLY DDDGEEDSTS SERRSSLHKS LVSSKDVESS RYVARSEHPQ VMRGYGFSKP  180
SGYLKVKGDN ENVAITAVKR QLGRQYREDG PPLGVVFDPL PPGAFEPQTN VIVQEPIYVG  240
SQRRSHPPYF TGTRKSFVPG PSYELARKSK MHSSEDEDED DDEDEDDMMG GMEPGLGDKQ  300
SLREPSFKSP SLSYSNAAVP DRKGPPQGVP STNNKKSHIS SKGRAEGSRN NMIADFHNLS  360
GTNQTHDYDK STFNGGRQTG YLAKSSNMLP LSSSRSSDSM ERDPSSGMVG KYHGEKMNHR  420
EMHREKLHST GEPLVTKGLK HGYPQQLYTP KPSNSETFER KDQINRSGVE LPSSFNGDET  480
EESSSSSMD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC122543	0.0	AC122543.1 Genomic sequence for Brassica oleracea, clone B21H13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018465805.1	0.0	PREDICTED: uncharacterized protein LOC108837242
TrEMBL	A0A0D3E089	0.0	A0A0D3E089_BRAOL; Uncharacterized protein
STRING	Bo9g006450.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12202	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	0.0	HB-other family protein