PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC19307_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 442aa    MW: 49651.2 Da    PI: 8.5475
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC19307_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0001997117323
                  ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                  C  Cgk F+++  L  H+ +H
  RrC19307_p1  97 CRECGKGFPSSKALCGHMASH 117
                  99*****************99 PP
2zf-C2H211.80.00072386408123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C ++F++   L  H r+H
  RrC19307_p1 386 HECPICFRVFKSGQALGGHKRSH 408
                  79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.58E-6536No hitNo description
Gene3DG3DSA:3.30.160.609.7E-6634IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.157936IPR007087Zinc finger, C2H2
SMARTSM003550.15931IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-5933IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.02195117IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.47195122IPR007087Zinc finger, C2H2
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
PfamPF139127.3E-596119IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974386408IPR007087Zinc finger, C2H2
SMARTSM003550.14386408IPR015880Zinc finger, C2H2-like
PfamPF139123.7E-10386408IPR007087Zinc finger, C2H2
PROSITE patternPS000280388408IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MEQCNERRFV CKFCNKRFAC GKSLGGHIRT HMSNKNTADS DEDDEHNKLV IDENGGQSSY  60
GLRENPKKNK RFVDQREMMA LKHQQHQHQH QQRLLCCREC GKGFPSSKAL CGHMASHSER  120
EKIVMDSQSD TEASMSPTRR RSKRVVKHHH HHHKDDGFVV GGSIMNQYDS ASSDESEIET  180
EQEQMALSLM MLSRDSSGFK KGHNLVVNSL AESSDNNSVI LETKSSSGEQ LKIFEVKELC  240
KKDKVGVGVD HLRSGEDNGD VLYDSDNSDS GYFRNGPKKF DSDVSVDGFL RNTGFNSSQD  300
KSLNRFRTGS DRSSTKYDLR RSRTGFTSYG QKKIKYEFTE SVYDSGDQHS LETGSCADTI  360
KVHNSKPPMV KKASGGGGAK KKSKGHECPI CFRVFKSGQA LGGHKRSHFI GNHEHRTLVI  420
QQHQVAHEMH TLIDLNLPAP ID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894290.0AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence.
GenBankHM5609660.0HM560966.1 Brassica rapa subsp. chinensis C2H2 zinc finger transcription factor (MF20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437727.10.0PREDICTED: uncharacterized protein LOC108810094
TrEMBLA0A397YJE80.0A0A397YJE8_BRACM; Uncharacterized protein
STRINGBra012450.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein