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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC192_p9 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
MYB |
| Protein Properties |
Length: 240aa MW: 26886 Da PI: 4.9126 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC192_p9 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 41.8 | 2.5e-13 | 15 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ed +lvd + Gg +W+ +++ g++R++k+c++rw +yl
RrC192_p9 15 KGPWTADEDGKLVDFLRTRGGSggwCWRDVPKLAGLRRCGKSCRLRWTNYL 65
79******************99***************************97 PP
|
| 2 | Myb_DNA-binding | 56.2 | 8.1e-18 | 71 | 115 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg +++eE +l +d++ qlG++ W++Ia++++ gRt++++k++w+++
RrC192_p9 71 RGLFSEEEIQLVIDLHSQLGNR-WSKIAAELP-GRTDNDIKNYWNTH 115
7889******************.*********.************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 240 aa
Download sequence Send
to blast |
MGGRKPCCDE VGLRKGPWTA DEDGKLVDFL RTRGGSGGWC WRDVPKLAGL RRCGKSCRLR 60
WTNYLRPDLK RGLFSEEEIQ LVIDLHSQLG NRWSKIAAEL PGRTDNDIKN YWNTHIKRKL 120
IRMGIDPNTH HPFDQQKVNS EKEETTLVNG QTPRDEAEVP VGLQNDTSAG NLNHLADVDD 180
DSIQPWSFLM ENDGGGCSSA GELTMLLSGD ITSSCSSSSS LWLKYGEFGY EDFELGCFDD
|
| Functional Description ? help
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| Source |
Description |
| UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
