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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC19219_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
C2H2 |
| Protein Properties |
Length: 424aa MW: 46126.5 Da PI: 8.0562 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC19219_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15.2 | 6.2e-05 | 66 | 86 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C+ Cgk F r nL+ H r H
RrC19219_p1 66 CEVCGKGFQRDQNLQLHRRGH 86
*******************88 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010150 | Biological Process | leaf senescence |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0048573 | Biological Process | photoperiodism, flowering |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 424 aa
Download sequence Send
to blast |
MTGEVLKTVS SGSAFAPSSS TLDHDESLIN PPLVKKKRNL PGNPDPEAEV IALSPKTLMA 60
TNRFLCEVCG KGFQRDQNLQ LHRRGHNLPW KLKQRTSKEV RKRVYVCPEK TCVHHDPARA 120
LGDLTGIKKH FCRKHGEKKW TRDSFITHRA FCDALAEETA KINAASHLNG LSAGGAVGMN 180
LNYQYLMGTL NPQIQPFVPQ PPTNQNHHHH FLPPPPSSSS SLSLWMGQDI PTSQTQPQDY 240
EWVFGNAKAA SGCINNNHDD LITQTANASS TTTATFSVPS LFSSDQTQSP NANVNMSATA 300
LLQKAAEIGA SSTTPTSTNP SAFLTSFPLK SSDQTTTSYD GSEKFFALFG TNNNIGVVSN 360
SHDQEIENVR NDVTVASAMD ELQNYPWKRR KVDGGEGGGG GQTRDFLGVG VQTLCHPSSI 420
NGWI
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. |
