PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC19206_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 251aa    MW: 27841.6 Da    PI: 7.6128
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC19206_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.5e-1069115354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r+h+e+ErrRR+riNs +++Lr +l  +      K +Ka+ L k+v+ +k+L
  RrC19206_p1  69 RNHKEAERRRRERINSHLNKLRNVLACN-----SKTDKATLLAKVVQRVKEL 115
                  58***********************998.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.27266115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1269129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-869115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-1269127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-972121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00324156221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MQPETSDQML YSFLTGNELS GGGFSVSGDY MSTMQSLCGS SSSTSSYYPL AISGIGETVA  60
QDRALAALRN HKEAERRRRE RINSHLNKLR NVLACNSKTD KATLLAKVVQ RVKELKQQTL  120
EISDSDQTLL PSETDEISVL HYGDYSDDGH IIFKASLCCD DRSDLMPDIM EILKSLHMKT  180
LRAEISTLGG RTRSVLVVAA DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGERSK  240
RRRALDHIIM V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17479ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1190590.0AK119059.1 Arabidopsis thaliana At2g41130 mRNA for putative bHLH transcription factor (bHLH106), complete cds, clone: RAFL21-40-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478749.10.0PREDICTED: transcription factor bHLH106
SwissprotO806741e-147BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A1J3GMC51e-161A0A1J3GMC5_NOCCA; Uncharacterized protein
STRINGBra016951.1-P1e-159(Brassica rapa)
STRINGBo4g190700.11e-159(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-130bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]