PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC19173_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 453aa    MW: 50572.5 Da    PI: 8.4087
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC19173_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS211.64.2e-652694521189
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  lv+lL+ c ea+++++ +++++l+ar+ elasp+g +pm+Rl++y+teAL  r+ar++++++++ pp+e + ++ + +  al+++++v+Pi+kf h t
  RrC19173_p1 269 LVNLLIGCLEAIRTRNIAAINHLIARIGELASPRGtTPMTRLISYYTEALTLRVARMWPHIFHIAPPREFE-RTLEAADDALRFLNQVTPIPKFIHYT 365
                  689********************************99*********************************8.56666668999*************** PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                  aN+++l+a+eg+ervH+iDfdi+qGlQWp+++q+LasRp++p ++RiTgvg+    sk+el+etg+rL+ fAe++++pfef++ v++rled+
  RrC19173_p1 366 ANSMLLRAFEGKERVHVIDFDIKQGLQWPSFFQSLASRPNPPRHVRITGVGE----SKHELNETGDRLHGFAEAMRLPFEFHP-VVDRLEDV 452
                  ****************************************************....9**************************.79999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.473243453IPR005202Transcription factor GRAS
PfamPF035141.4E-62269452IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MLAGCSSSSL LSPTRRLRSE AVAAAAATSS TVSVHFPMNT QRLDLPCSSS NFSRKETPST  60
RPLARSISLD NINTNNNKTG GCSLKQSIKL PPLATTRANE DGFSWNSDNN NREKKSLKRL  120
AEENKEDESC LSRVKRQRGE DDHNMGFWFE HFTPAPLPFS LTCSGDNNDD EKVISSQPLP  180
GHPHWVNSVI TELAGLGDKD VETNRPASGS STSASAESHS LRHRVPQPTN GSRNPYSQHQ  240
GSSSIEGRIN NGNNNNNNHR NDSQRDLELV NLLIGCLEAI RTRNIAAINH LIARIGELAS  300
PRGTTPMTRL ISYYTEALTL RVARMWPHIF HIAPPREFER TLEAADDALR FLNQVTPIPK  360
FIHYTANSML LRAFEGKERV HVIDFDIKQG LQWPSFFQSL ASRPNPPRHV RITGVGESKH  420
ELNETGDRLH GFAEAMRLPF EFHPVVDRLE DVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3727644926199Protein SCARECROW
5b3h_A1e-3727644925198Protein SCARECROW
5b3h_D1e-3727644925198Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457562.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A3P5XXV70.0A0A3P5XXV7_BRACM; Uncharacterized protein
STRINGBo00795s120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein