PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC190_p6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 130aa MW: 15490 Da PI: 10.8266 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 55.2 | 1.9e-17 | 12 | 103 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F +++ye+++d++l+++isws++++ fv+++++e+ ++ + + F ++++ F+ +++gF++vk++++ +F++ +F +g+ ell+k++ RrC190_p6 12 FYSNIYEVVDDPSLDSIISWSKSNKGFVIWNPKELIERKIVTRFFCRELSQFISDVELFGFRRVKKSKH--------LKFTNANFVRGQPELLKKMQ 100 8999***************************999987777777778899****************9996........6*****************99 PP XXX CS HSF_DNA-bind 99 rkk 101 ++ RrC190_p6 101 SET 103 765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.3E-20 | 6 | 97 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.1E-22 | 8 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.5E-19 | 9 | 100 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.7E-17 | 12 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-6 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-6 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MVHEYPKGLD SFYSNIYEVV DDPSLDSIIS WSKSNKGFVI WNPKELIERK IVTRFFCREL 60 SQFISDVELF GFRRVKKSKH LKFTNANFVR GQPELLKKMQ SETSFARFKK RRRAARAKAQ 120 VEERLQRLQI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469772.1 | 1e-75 | PREDICTED: heat stress transcription factor A-4a-like | ||||
Refseq | XP_018470204.1 | 1e-75 | PREDICTED: heat stress transcription factor A-4a-like | ||||
TrEMBL | A0A1J3HJS9 | 8e-41 | A0A1J3HJS9_NOCCA; Heat shock factor protein HSF8 | ||||
STRING | Bra013406.1-P | 2e-38 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5067 | 14 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G19630.1 | 6e-33 | HSF family protein |