PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC190_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 1380aa    MW: 154572 Da    PI: 9.0604
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC190_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-0712271249426
                 ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                 +lCr + rtG C  G++C+F H+
  RrC190_p1 1227 RLCRSYVRTGNCAVGPSCSFDHP 1249
                 89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002551.4E-479217IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015823.9E-2084240IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF522008.76E-1395219IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS501049.765124217IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525403.08E-29234451IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009317.7E-15258451IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3001.6E-5272302IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003643.3E-18274289No hitNo description
PRINTSPR003643.3E-18350364No hitNo description
PRINTSPR003643.3E-18441455No hitNo description
Gene3DG3DSA:3.40.50.3001.6E-5456505IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF520581.41E-32529775IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.3E-26534773IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077251.5E-8592611IPR011713Leucine-rich repeat 3
PRINTSPR003643.3E-18725741No hitNo description
SuperFamilySSF520581.16E-13865966IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.105.0E-14868967IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5010311.57312231251IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-512271249IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-412271248IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1380 aa     Download sequence    Send to blast
MDRLLALRRQ GLPDFEPSLP PRVMDRIIDR MKKSSNQRGI SRGRLERCSS SFGEDLPSSF  60
KQVETSFQPK SSEHSITGPD PVLVIYCDHN QVSEETYFIN YIFNELRVRG FAPSRYDIKM  120
RTVATENQKM LLISRVGIII FSMNFAHSRE CLDGVLAIMD HSKANDLVLI PVFLKVSVSD  180
VRGQSGSFGK AFTRLGNSVK ASQVLKWKAA MIELTSITGY VYKKGDEVIL AKNIVRDVCL  240
PLSSGTNMKL RGTRLSLKSI LSMLNRSQPS APQIVGLWGM AGIGKTTITR GFFRTQAERY  300
DVCYFLPDFH LMCQTKGLSY LRDEFFSKVF GADKVFIDAC DAKLSFTRDR FLGKKVLIVL  360
DGVSSARDAE VLVGGFGWFS GGHTIILTSR NRQVLVQCNA KEIYEIEKLS KHESLHLCST  420
VATKEKWKGK MWLTSELVNY ASGNPLALRV LDLGICGLID ESLISLVDNK IEMPNIFQDV  480
GRFIICQEHK EAGKRSRLWD SSDIAGVLIH NTGTEAIEGI FLDASSLTFD LSSTAFERMY  540
RLRLLKLHCL TSVNHCKVCL SGGLHSLPDE LRLLHWERYP LGSLPRNFNP KNLVELNMPY  600
SNLTKVWKGT KNLEKLKRII LSHSQQLTKF PRLSKARNLE HIDLEGCTSL VKVNSSILHH  660
QKLTFLNLKN CSRLRVMPTT INLISLEVLN LSGCSELENL QDLSSNLKEL YLAGTAIRGM  720
PSSIGDLTRL VTLDLENCES LQHLPPGISN LKAMMTLKLS GCSNLKSLPV LDALFLQDSQ  780
RPNTRITMEE SVSISLHSAI QESRLDGSET LLNLDNFQLR SDIHGSCFSR EPVEEFLPSF  840
EYPSNNGISQ ESWTRAATVI PFPSSILNSL ASRLYALVSL FLCNAYLVDI PEDICWLASL  900
RRLDLGGNSF SQIPKSIKEF RKLHSLRLRH CKNLKSLPEL PRSLVILNAH GCVSLKSFPS  960
SFEQFPRHYT FSNCFNLSPK VVRKYIGKAL DSVKGMSKGR ILEASLEQEQ EHLNAPAFSI  1020
CIPASAGHQS SVNLQAGSSV RIELAPGMLN TLSGFVLSVV VEFGDNYSNT SGFAIKCICR  1080
KTTTDLSPRL ERVFQCWAPK EPTTVQRDHM FVFGSLKMHH AEAINHDFLS DSVTFEFHPV  1140
NSENQLLGDS CTVKRCGVCL ITDATCNTTL SAKRPSSSMD HPGGLSGMEQ VAPPYKRCRL  1200
KRVIEIVILS LRKRKREMSV PTSMVKRLCR SYVRTGNCAV GPSCSFDHPT WVLTHKTASS  1260
VPSESPRMET STENFKRLSV PESRQVTAGK DATDTEQEEE FILVQFLLAS NMKPLLASPT  1320
HLSRPLPVNQ LNQQLGFNRF PRLDFLRRIE QKSLETAMDP NQYARAYSPS NKGCLILIKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ku7_A3e-159822023146TIR-NB-LRR type resistance protein RPV1
5ku7_B3e-159822023146TIR-NB-LRR type resistance protein RPV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111511155TVKRC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013734290.10.0disease resistance protein RRS1-like isoform X2
TrEMBLM4DA900.0M4DA90_BRARP; Uncharacterized protein
STRINGBra013400.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5462920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.31e-129WRKY family protein