PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC18996_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 178aa MW: 20347.3 Da PI: 4.5042 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 47.7 | 5e-15 | 5 | 134 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratk....sgyWkatgkdke 91 p+++rF Ptdee+ e+L ++++++ le i+++ y +P+ pk+++ +++ wyf +++ k + + ++nr+++ +g Wk gk + RrC18996_p2 5 PKCVRFAPTDEEVFEEFLIPRIANDLQALEGSlIADFPFYAQDPRYAPKEIQPlflSDNYWYFVTRTPLK-PGSLKPNRVVAnqilQGKWKDVGKPQI 101 789*******************99987776656*************997665555577788777766665.6788999964446779**********9 PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +++ ++ + g tL + +++ t W hey+ RrC18996_p2 102 ITRGNTLNLGKMITLDYV---NSENLMTGWRQHEYE 134 999788888888899998...344468********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-17 | 4 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.513 | 4 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-10 | 6 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MAAAPKCVRF APTDEEVFEE FLIPRIANDL QALEGSLIAD FPFYAQDPRY APKEIQPLFL 60 SDNYWYFVTR TPLKPGSLKP NRVVANQILQ GKWKDVGKPQ IITRGNTLNL GKMITLDYVN 120 SENLMTGWRQ HEYERIVDAP IFQTVVVVRL FYDLKLDQTA VLENVNDDLL DVDALVGE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002865962.2 | 3e-37 | uncharacterized protein LOC9300309 isoform X1 | ||||
Refseq | XP_020869276.1 | 2e-37 | uncharacterized protein LOC9300309 isoform X2 | ||||
Refseq | XP_020869281.1 | 2e-37 | uncharacterized protein LOC9300309 isoform X3 | ||||
Refseq | XP_020869287.1 | 2e-37 | uncharacterized protein LOC9300309 isoform X4 | ||||
Refseq | XP_020869291.1 | 1e-37 | uncharacterized protein LOC9300309 isoform X5 | ||||
Refseq | XP_020869302.1 | 9e-38 | uncharacterized protein LOC9300309 isoform X6 | ||||
Refseq | XP_020869311.1 | 8e-38 | uncharacterized protein LOC9300309 isoform X7 | ||||
TrEMBL | A0A1J3JQP4 | 2e-45 | A0A1J3JQP4_NOCCA; Uncharacterized protein (Fragment) | ||||
STRING | Bostr.26833s0491.1.p | 2e-42 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17442 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15500.1 | 4e-11 | NAC domain containing protein 3 |