PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18996_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 178aa    MW: 20347.3 Da    PI: 4.5042
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18996_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.75e-1551342127
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratk....sgyWkatgkdke 91 
                  p+++rF Ptdee+  e+L ++++++   le   i+++  y  +P+  pk+++    +++ wyf +++  k + + ++nr+++    +g Wk  gk + 
  RrC18996_p2   5 PKCVRFAPTDEEVFEEFLIPRIANDLQALEGSlIADFPFYAQDPRYAPKEIQPlflSDNYWYFVTRTPLK-PGSLKPNRVVAnqilQGKWKDVGKPQI 101
                  789*******************99987776656*************997665555577788777766665.6788999964446779**********9 PP

          NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                  +++ ++ + g   tL +    +++   t W  hey+
  RrC18996_p2 102 ITRGNTLNLGKMITLDYV---NSENLMTGWRQHEYE 134
                  999788888888899998...344468********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-174152IPR003441NAC domain
PROSITE profilePS5100522.5134153IPR003441NAC domain
PfamPF023651.6E-106134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MAAAPKCVRF APTDEEVFEE FLIPRIANDL QALEGSLIAD FPFYAQDPRY APKEIQPLFL  60
SDNYWYFVTR TPLKPGSLKP NRVVANQILQ GKWKDVGKPQ IITRGNTLNL GKMITLDYVN  120
SENLMTGWRQ HEYERIVDAP IFQTVVVVRL FYDLKLDQTA VLENVNDDLL DVDALVGE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865962.23e-37uncharacterized protein LOC9300309 isoform X1
RefseqXP_020869276.12e-37uncharacterized protein LOC9300309 isoform X2
RefseqXP_020869281.12e-37uncharacterized protein LOC9300309 isoform X3
RefseqXP_020869287.12e-37uncharacterized protein LOC9300309 isoform X4
RefseqXP_020869291.11e-37uncharacterized protein LOC9300309 isoform X5
RefseqXP_020869302.19e-38uncharacterized protein LOC9300309 isoform X6
RefseqXP_020869311.18e-38uncharacterized protein LOC9300309 isoform X7
TrEMBLA0A1J3JQP42e-45A0A1J3JQP4_NOCCA; Uncharacterized protein (Fragment)
STRINGBostr.26833s0491.1.p2e-42(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1744279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.14e-11NAC domain containing protein 3