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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
RrC18955_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
SRS |
| Protein Properties |
Length: 229aa MW: 24363.8 Da PI: 8.793 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC18955_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 116.4 | 3.9e-36 | 131 | 225 | 4 | 96 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelks.kkqsalsstklssaes 96
g+asCqdCGnqakkdCah RCRtCCksrgfdC thv+st vpaakrrerq+ql++ + ++ + + ++ +kr+re+ +++sal +t+++++++
RrC18955_p1 131 GGASCQDCGNQAKKDCAHVRCRTCCKSRGFDCPTHVRSTLVPAAKRRERQHQLSTVQPQTHQPRgDSGVPKRQRENLPaATSSALVCTRIPTHNA 225
789*************************************************9999877777665777889999886515667889999998875 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MAGFFSLDGG GRGGGGGNSQ EEHHTNTNTN PPPPVSEAWL WYRNPNVNAN APSSTNAAAL 60
GTLELWQNHS QQEIMFQHQQ HQQRLDLYSS AAGLGVGPSN HSQFDISGEN SNAAAGRAAA 120
LMMMRSGGSG GGASCQDCGN QAKKDCAHVR CRTCCKSRGF DCPTHVRSTL VPAAKRRERQ 180
HQLSTVQPQT HQPRGDSGVP KRQRENLPAA TSSALVCTRI PTHNASGIS
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GU205262 | 0.0 | GU205262.1 Brassica rapa subsp. pekinensis stylish (STY1-1) mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G51060.1 | 6e-71 | Lateral root primordium (LRP) protein-related |
