PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1893_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 429aa    MW: 45939.5 Da    PI: 9.2673
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1893_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.7e-11326327
                S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                 elCr+f++ G C+yG+rC++ H++
  RrC1893_p2  3 KELCRNFQQ-GSCRYGERCRYLHPQ 26
                69*******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-7126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.924127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.01E-6225IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-8326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MRKELCRNFQ QGSCRYGERC RYLHPQQTKP NNPFGFGTQS SRDQQQQTKS SSNPFGFGVQ  60
GASNSNNRPN QSQPFQNTWQ RNPSSAGGGG GASSTQQSGK QTQQADHKCT DPATCKRFIQ  120
EDLKNERPMW KLTCYAHFKH LPCDISGDIS YEELRAMAYE ESKRGVPLQS IVERERNLQN  180
AKVAEFENFL RSPYRGPVTA NQTAPSIFPP ASQVNSPPGF SAFSQQPAFP NTNAGGGVSS  240
SGPPNPFGRF NQQPNAFSLN TPQPAPSGPS GFQTQPSPFG PGPVAPSGFQ TQPSAAFKPS  300
SFGPGPVAPS GFQTQPSAMF KPASFGPGPV APSGFQTQPS SFGPGPGLAA PPQNSNIFPS  360
VTPTPAFNSN QNNQTAFNFS SPVVDTANTP SGTELQAGGA PVDTSIWLKE KWNPGEIPEQ  420
APPDAFVHR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444257.10.0PREDICTED: zinc finger CCCH domain-containing protein 16-like
RefseqXP_018444259.10.0PREDICTED: zinc finger CCCH domain-containing protein 16-like
SwissprotQ9FWS31e-172C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLM4DH740.0M4DH74_BRARP; Uncharacterized protein
STRINGBra015851.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.21e-149C3H family protein