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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC1881_p7 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
MYB |
| Protein Properties |
Length: 328aa MW: 37723.9 Da PI: 6.3412 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC1881_p7 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 60.3 | 4.3e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEde+l+d ++++G g+W++ ++ g++R++k+c++rw +yl
RrC1881_p7 14 KGPWTQEEDEKLIDHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNYL 61
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 56.3 | 7.1e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T+eE+e +++++ +lG++ W++Ia+ ++ +Rt++++k++w+++l
RrC1881_p7 67 RGNFTEEEEETIINLHSLLGNK-WSSIASNLP-RRTDNEIKNYWNTHL 112
89********************.*********.************996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MGRSPCCDEN GLKKGPWTQE EDEKLIDHIQ KHGHGSWRAL PKQAGLNRCG KSCRLRWTNY 60
LRPDIKRGNF TEEEEETIIN LHSLLGNKWS SIASNLPRRT DNEIKNYWNT HLRKRLLQMG 120
IDPMTHRPRT DHLNVLAALP QLIAAANFNS LLNLSQNVQL DATTLAQAQF LHNMIQVIST 180
NNKNNPSSAP LAMQTNNNLF GRQSSYLENQ NLFGQSQNFS QIFENSRHDE DFIVKNQTID 240
HPLDYFSSPI QMDVQDDPYS LPLLVPDSPE ESKQSQMMIK NKDIVQHHRH DTSNPSSSNS 300
SFTQDHHQPW CDTIDDEASD SYWKDIIE
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
