PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1881_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 467aa    MW: 51572.1 Da    PI: 4.4374
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1881_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35291202102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++e++sws+ +nsfvv+d  ef+k  LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +++k+ll+ i 
    RrC1881_p4  29 FLSKTYDMVDDPSTNEVVSWSSGNNSFVVWDVPEFSKVFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRNQKQLLKGIT 116
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+ks
    RrC1881_p4 117 RRKS 120
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.3E-3824112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-5725118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-3425118IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-192952IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3029118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MEPVLEPAPS VNSTNPPPIP PPVNTVAPFL SKTYDMVDDP STNEVVSWSS GNNSFVVWDV  60
PEFSKVFLPK YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRNQKQ LLKGITRRKS  120
PHVQQQNQQV QNSSLTACVE VGKFGIAEEE VERLKRDKNV LTQELVRLRH QQQATEHQLQ  180
DAVQKVQAME QRQQQMMSFL AKAVQSPGFL NQLVVLQQSN DGSRQIQGSS NKKRRLPQEA  240
DDVDRQIVKY QPSINEAAQS MLRQFLNMSS SSNESESVSD NPGSFLVGDV PSANSLNSSN  300
TVSGETQAEV SPDSAHSAMN QVPAAGLAHH PQAGLVQGVA AAASWSPESE LLIGCETGNG  360
ECLEPIVAAL GDAVTPEGEG EMRALLNEVP ELPGVQDPFW EQFFADEAPV SGETDETITG  420
SVENSDLAME QELSEWTRDQ QQVNHITEQM GFLSSETHRE GEVVKGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-242611826129Heat shock factor protein 1
5d5v_B4e-242611826129Heat shock factor protein 1
5d5v_D4e-242611826129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446687.10.0PREDICTED: heat stress transcription factor A-1b-like isoform X2
SwissprotO818210.0HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLA0A3P6D8B40.0A0A3P6D8B4_BRACM; Uncharacterized protein
STRINGBo00967s020.10.0(Brassica oleracea)
STRINGBo9g151630.10.0(Brassica oleracea)
STRINGBo9g161770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.20.0heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]