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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
RrC18791_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
C3H |
| Protein Properties |
Length: 258aa MW: 29107.6 Da PI: 8.3204 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC18791_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 47.6 | 2.7e-15 | 180 | 204 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
ktelC+ +++tGtC+yGd C+FaHg
RrC18791_p1 180 KTELCNKWQETGTCPYGDHCQFAHG 204
9***********************8 PP
|
| 2 | zf-CCCH | 21.6 | 3.8e-07 | 217 | 242 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykte Cr +++ +C+yG rC+F H+
RrC18791_p1 217 YKTEVCRMVLAGDICPYGHRCHFRHS 242
9**********55**********998 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 1.5E-18 | 173 | 211 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.01E-11 | 175 | 210 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.23 | 178 | 206 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.9E-9 | 178 | 205 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.5E-12 | 180 | 204 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.0E-12 | 212 | 245 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.14E-9 | 212 | 247 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.8E-5 | 216 | 243 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.272 | 216 | 244 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.7E-4 | 217 | 242 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 258 aa
Download sequence Send
to blast |
MQQRRQDMVN REALCYTRLH EATLEAEALR AENTELRSLN LLLKKEIDQL IRSSLRSRYN 60
RAPLRTLGGN NENQSPPAAA AAGDRNRRDD DDVGDESPTN EDVNRSSLPK SISVRSSGYS 120
KANQGGGGFV VQSRAAIPKP GTCAQQRFTT TRKVYVRGGK KEEDEEEEIE VEVYNQGMTK 180
TELCNKWQET GTCPYGDHCQ FAHGIKELRP VIRHPRYKTE VCRMVLAGDI CPYGHRCHFR 240
HSLSDQEKLM AAACKPNN
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189489 | 1e-119 | AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence. |
