PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18714_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family DBB
Protein Properties Length: 146aa    MW: 15969.9 Da    PI: 5.5774
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18714_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.78.5e-07446541
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                  C+ +e+ e++  C +++  lC+ C  + H+g      H +vp
  RrC18714_p1  4 QCEVCEKAEAEVLCCSDEAALCKPCDITVHEGnklfqrHHRVP 46
                 7*****************************9999999977776 PP
2zf-B_box29.51.5e-095895338
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH..kgHt 38
                 ++ C+ ++e +  +fC d++ llC+dC  ++H  ++H+
  RrC18714_p1 58 APLCDICKERKGYFFCLDDRALLCNDCDGAIHicNSHQ 95
                 689******99********************8546687 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.793147IPR000315B-box-type zinc finger
CDDcd000218.00E-6347No hitNo description
SMARTSM003361.1E-5447IPR000315B-box-type zinc finger
SMARTSM003367.3E-125699IPR000315B-box-type zinc finger
PROSITE profilePS501199.3435699IPR000315B-box-type zinc finger
PfamPF006431.5E-75895IPR000315B-box-type zinc finger
CDDcd000211.23E-65999No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MKIQCEVCEK AEAEVLCCSD EAALCKPCDI TVHEGNKLFQ RHHRVPLQKT ASTTSSAAPL  60
CDICKERKGY FFCLDDRALL CNDCDGAIHI CNSHQRFLLS GVQASDQSLT KSSGCSTSLN  120
SETYQIQSKA SLDSQRSSEE NEAGNS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250|UniProtKB:Q9SJU5}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533411e-123AK353341.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-E09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452609.11e-102PREDICTED: B-box zinc finger protein 23
SwissprotO826172e-81BBX23_ARATH; B-box zinc finger protein 23
TrEMBLA0A3P5Y0G42e-96A0A3P5Y0G4_BRACM; Uncharacterized protein
STRINGBo9g088220.13e-96(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125022430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10240.11e-83DBB family protein
Publications ? help Back to Top
  1. Zhang X, et al.
    A PIF1/PIF3-HY5-BBX23 Transcription Factor Cascade Affects Photomorphogenesis.
    Plant Physiol., 2017. 174(4): p. 2487-2500
    [PMID:28687557]