PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC184_p6

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 284aa MW: 32769.4 Da PI: 9.6175

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC184_p6	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.1	9e-15	126	176	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r +h ++Er+RR+++N+ ++ Lr+llP++ + ++++ a+i+ A++Y+k L RrC184_p6 126 QRINHIAVERNRRRQMNEHINSLRSLLPPS---YIQRVDQASIVGGAINYVKVL 176 699*************************...9***************977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.83E-12	124	181	No hit	No description
SuperFamily	SSF47459	1.96E-17	125	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.2E-14	125	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.031	125	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.6E-12	126	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.2E-12	131	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MQDTVPFLQM LQSEEDPLPF TSFKELLSLQ NFHNHWGLES YLSQNETNRF YHNPVSALSM 60 EVTNHAVSSQ ELPLSREDMT VPSSSSTPNS RRKRKTISNP PPEVTREKRK RRKTKPSKDI 120 EEIENQRINH IAVERNRRRQ MNEHINSLRS LLPPSYIQRV DQASIVGGAI NYVKVLEQVI 180 QSLELQKRAQ QSSRVENRVT CVPRIEATLI QNHVNLKVEC RKKQGQLLKG IVSLEKLRLT 240 VLHLNISSLS LSLVSYCFNL KMEDDCKLES AEEITKVAQQ IFDT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	112	KRKTISNPPPEVTREKRKRRK
2	107	112	KRKRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488600	1e-79	AF488600.1 Arabidopsis thaliana clone bHLH067 putative bHLH transcription factor mRNA, partial sequence.
GenBank	AJ630481	1e-79	AJ630481.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g61950.
GenBank	AK118527	1e-79	AK118527.1 Arabidopsis thaliana At3g61950 mRNA for putative bHLH transcription factor (bHLH067), complete cds, clone: RAFL19-75-M14.
GenBank	AY088741	1e-79	AY088741.1 Arabidopsis thaliana clone 93825 mRNA, complete sequence.
GenBank	BT005298	1e-79	BT005298.1 Arabidopsis thaliana At3g61950 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018490013.1	0.0	PREDICTED: transcription factor bHLH67
Swissprot	Q700E4	1e-107	BH067_ARATH; Transcription factor bHLH67
TrEMBL	A0A0D3DUZ6	1e-168	A0A0D3DUZ6_BRAOL; Uncharacterized protein
STRING	Bo8g097470.1	1e-169	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3119	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61950.1	1e-100	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development. J. Exp. Bot., 2015. 66(5): p. 1543-52 [PMID:25582452]