PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1847_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 354aa    MW: 42114.3 Da    PI: 7.0355
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1847_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.21.1e-12151358128
         NAM   8 hPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglk 103
                 +P+de ++++yL+  ++++k   +++   +e+++y+++Pw+     +++      F+k+++  + gk    +  +g W+   +dk+++s+ +g+  g k
  RrC1847_p1  15 EPEDEIIISYYLNMMINNRKSWPDHFlrDEEANVYNLNPWRSF---NTN-PYNLIFVKSRT-DSCGKTDGSV--TGCWRIMARDKPIKSEeTGRILGFK 106
                 7****************9994443441145669*******974...333.34455555444.3445555554..68************9877888**** PP

         NAM 104 ktLvfykgrapkge....ktdWvmheyrl 128
                 k+L f +++++++e    +  W+m+eyrl
  RrC1847_p1 107 KILKFCENDKKRSEqeegEIIWIMEEYRL 135
                 ******655444441222667******98 PP
2NAM43.31.1e-131903269128
         NAM   9 PtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvgl 102
                 P  +e++++yLk  v++++ +  ++ +++ ++y + Pw +  +  +  + +k  yfF++r++++    r+ +  + g W+   +d+ + sk ++e+ g 
  RrC1847_p1 190 PPTDEIISYYLKMCVDARNSHWPSHfLQSEQVYGAVPWMIVdAdqSSVELHKGRYFFVNREESS---GRTDQGCDGGCWRIMRRDRVISSKrNKEVLGF 285
                 66679***********99977755559999**********63232222234578*****99875...588888899*************99677889** PP

         NAM 103 kktLvfy...............kgrapkgektdWvmheyrl 128
                 k+++ f                ++ + +  k +Wvm+eyrl
  RrC1847_p1 286 KRMFKFCvkegeaepvykfwgdEKYEVNEFKVTWVMDEYRL 326
                 *******98888777777766556666778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.6318151IPR003441NAC domain
PfamPF023654.8E-915135IPR003441NAC domain
SuperFamilySSF1019411.12E-1916149IPR003441NAC domain
PROSITE profilePS5100521.163182342IPR003441NAC domain
PfamPF023651.4E-9189326IPR003441NAC domain
SuperFamilySSF1019411.29E-20190340IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEDQSKISQE DDQIEPEDEI IISYYLNMMI NNRKSWPDHF LRDEEANVYN LNPWRSFNTN  60
PYNLIFVKSR TDSCGKTDGS VTGCWRIMAR DKPIKSEETG RILGFKKILK FCENDKKRSE  120
QEEGEIIWIM EEYRLVDKWK QDQVICKIRA LLRYEVTSLL AKHFSLLPKW IIPLFRRDLL  180
PSFDLCVPNP PTDEIISYYL KMCVDARNSH WPSHFLQSEQ VYGAVPWMIV DADQSSVELH  240
KGRYFFVNRE ESSGRTDQGC DGGCWRIMRR DRVISSKRNK EVLGFKRMFK FCVKEGEAEP  300
VYKFWGDEKY EVNEFKVTWV MDEYRLAKKK EQGKVICRIS LLFPCPLDSH FEYF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455508.10.0PREDICTED: uncharacterized protein LOC108826619
TrEMBLA0A3P5XZD00.0A0A3P5XZD0_BRACM; Uncharacterized protein
STRINGBra029571.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1822159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60300.18e-71NAC family protein