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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
RrC18473_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
HSF |
| Protein Properties |
Length: 201aa MW: 22836.9 Da PI: 4.6487 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC18473_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 44 | 6.1e-14 | 43 | 121 | 5 | 89 |
HHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
HSF_DNA-bind 5 klyeiledeelkeliswsengnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89
+ye+++d+++++++sw ++g+sf+v++e+ef +vLp+ + + ++SF+ + + g++kv+++ + we++ +++ +g
RrC18473_p1 43 DVYEMVNDPSTDSVVSWGDSGKSFIVWKESEFLGDVLPRclSYDYKDMTSFTTKFHALGYNKVEESVH--------WEYTANYLVRG 121
68*************************************667999******************98873........67766666665 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 201 aa
Download sequence Send
to blast |
MDRDSNDGRI PLSSLSCYKE MCRLADKDCH FSTIRRPPLL FRDVYEMVND PSTDSVVSWG 60
DSGKSFIVWK ESEFLGDVLP RCLSYDYKDM TSFTTKFHAL GYNKVEESVH WEYTANYLVR 120
GQPPSPKDPS PCTSADLLTM VTPEYAKIYK CWLIDCLESI RSNRQKACDA NFGVVILEIL 180
KGKEALDFDK PAEEEDPGGM G
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