PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18366_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 400aa    MW: 44674.1 Da    PI: 6.6605
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18366_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.21.6e-33221279159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK vk+s++prsYYrCt+ gC vkk+vers++dp++v +tYeg+H h+
  RrC18366_p1 221 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIVMTTYEGQHSHP 279
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-34206281IPR003657WRKY domain
SuperFamilySSF1182901.05E-29214281IPR003657WRKY domain
PROSITE profilePS5081132.845216281IPR003657WRKY domain
SMARTSM007743.6E-40221280IPR003657WRKY domain
PfamPF031066.6E-27222279IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MEKKIEQHQK EQLNSTKNTE TKIEHQEQQI SQASSSSSHM ANLATSSDHH LHQLELAGNN  60
INLSSIFDTP ISLPFPYSYF EDHSSNNPNS FLDLLRQDQH QFASSSNPSS FSFDAFPLQN  120
SNDTNLFFTD LPLPQPVTTK AESSEVVNTA PTSPNSTSVS SSSNEAANDI TNKEVAVKDQ  180
EEGDQQEHKG TKPQLKAKKK NQKKAREARF AFLTKSDIDN LDDGYRWRKY GQKAVKNSPY  240
PRSYYRCTTV GCGVKKRVER SSDDPSIVMT TYEGQHSHPF PMTPRGHIGM LTSPILDHGA  300
TTASSSSFSI PQPRYLLTQH HQPYNSMYNT SLSMINRSSP DGTFINPGPS SFPGFGYDHM  360
PQASTSTTSA IRDHGLLQDI LPLQIREDSI NTQINEEDKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-282142811077Probable WRKY transcription factor 4
2lex_A5e-282142811077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300590.0KF430059.1 Brassica rapa WRKY transcription factor 48 (WRKY48) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485307.10.0PREDICTED: probable WRKY transcription factor 48
SwissprotQ9FGZ41e-172WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A3P5YKI80.0A0A3P5YKI8_BRACM; Uncharacterized protein
TrEMBLM4D0N30.0M4D0N3_BRARP; Uncharacterized protein
STRINGBra010032.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56242648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.11e-151WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]