PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18351_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 201aa    MW: 23456.5 Da    PI: 6.9374
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18351_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.31.3e-18161644128
          NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknr.atk...sgyWkatgkdke 91 
                  G++F+P d+el++eyL +k++g++ e+   i+  d+y+ ePw L++ + +  +++ewy+ ++r + ++     gk+++r +t+   sg Wka  k   
  RrC18351_p1  16 GIQFQPYDDELINEYLIPKLKGQPREE---ITMKDVYSKEPWLLDHPMGSffKKNEWYYIVTRTQLSKkkigCGKKAKRkITRdddSGSWKANAK-GY 109
                  99**********************766...9999**********86444444889****9998765553334567777745556779****9988.55 PP

          NAM  92 vlsk.kgelvglkktLvfy......kgrapkge...........ktdWvmheyrl 128
                  + ++ ++ ++g  +tL+f       ++++++g            +++W+m ey l
  RrC18351_p1 110 IRDEeTKMVIGQHQTLAFVkskvnnEKKQKRGDstscdvvvpgsESSWIMTEYML 164
                  555437788**********666655223333223344445555589999999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-215180IPR003441NAC domain
PROSITE profilePS5100523.19713182IPR003441NAC domain
PfamPF023651.1E-1316163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MYEYNDMYEY NEEDGGIQFQ PYDDELINEY LIPKLKGQPR EEITMKDVYS KEPWLLDHPM  60
GSFFKKNEWY YIVTRTQLSK KKIGCGKKAK RKITRDDDSG SWKANAKGYI RDEETKMVIG  120
QHQTLAFVKS KVNNEKKQKR GDSTSCDVVV PGSESSWIMT EYMLPEIEGK FQELVICKIH  180
VIENSNKKKG HDDRQEASTS S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464497.11e-135PREDICTED: NAC domain-containing protein 35-like
TrEMBLA0A397XK521e-104A0A397XK52_BRACM; Uncharacterized protein
STRINGBo9g135820.11e-104(Brassica oleracea)
STRINGBo9g135840.11e-105(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.17e-14NAC domain containing protein 35